Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   LZJ94_RS07075 Genome accession   NZ_CP090057
Coordinates   1385015..1386259 (+) Length   414 a.a.
NCBI ID   WP_003738906.1    Uniprot ID   A0A823IQ78
Organism   Listeria monocytogenes strain FSL-J1-158     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1380015..1391259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZJ94_RS07055 (LZJ94_07055) yfmH 1381190..1382476 (+) 1287 WP_070034115.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LZJ94_RS07060 (LZJ94_07060) ymfI 1382569..1383300 (+) 732 WP_003738904.1 elongation factor P 5-aminopentanone reductase -
  LZJ94_RS07065 (LZJ94_07065) - 1383351..1384280 (+) 930 WP_070034149.1 helix-turn-helix domain-containing protein -
  LZJ94_RS07070 (LZJ94_07070) pgsA 1384371..1384949 (+) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LZJ94_RS07075 (LZJ94_07075) cinA 1385015..1386259 (+) 1245 WP_003738906.1 competence/damage-inducible protein A Machinery gene
  LZJ94_RS07080 (LZJ94_07080) recA 1386532..1387578 (+) 1047 WP_003725961.1 recombinase RecA Machinery gene
  LZJ94_RS07085 (LZJ94_07085) rny 1387879..1389441 (+) 1563 WP_003738907.1 ribonuclease Y -
  LZJ94_RS07090 (LZJ94_07090) - 1389555..1390052 (+) 498 WP_069888835.1 GNAT family N-acetyltransferase -
  LZJ94_RS07095 (LZJ94_07095) - 1390057..1390860 (+) 804 WP_003721906.1 TIGR00282 family metallophosphoesterase -
  LZJ94_RS07100 (LZJ94_07100) - 1390877..1391239 (+) 363 WP_003738909.1 RicAFT regulatory complex protein RicA family protein -

Sequence


Protein


Download         Length: 414 a.a.        Molecular weight: 45650.86 Da        Isoelectric Point: 4.7052

>NTDB_id=640391 LZJ94_RS07075 WP_003738906.1 1385015..1386259(+) (cinA) [Listeria monocytogenes strain FSL-J1-158]
MASAEIIAVGTELLLGQIVNANAAFISQELAADGIYVYHHTVVGDNPMRLKEVIEIAENRSDILIFTGGLGPTEDDITKQ
ILANHLDKQLVEDEYHMNKINEYFTSRNRTMTENNKLQAVIIEGSTVLNNDYGFAAGMYLKENNHTYVLLPGPPSEMKPM
FTNYANPLLLSESGEQNILESKIMRFFGIGESQLATDLNDLIVTQVNPTIATYAGDNEVVVRITATAKTKEEASRLVKDT
EEEVLRRDGSFLYGYGEVSLPELVTAMLLEKELTISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEEIKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGHEAEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=640391 LZJ94_RS07075 WP_003738906.1 1385015..1386259(+) (cinA) [Listeria monocytogenes strain FSL-J1-158]
ATGGCAAGTGCAGAAATCATTGCAGTAGGAACAGAACTATTACTTGGACAAATTGTTAATGCTAATGCTGCGTTTATTTC
TCAAGAATTAGCTGCAGACGGAATATATGTATATCATCACACGGTGGTTGGAGATAATCCAATGCGTTTAAAAGAAGTAA
TCGAAATTGCTGAAAACCGAAGTGACATTTTAATCTTTACCGGCGGACTTGGACCGACTGAGGATGATATTACGAAACAA
ATCTTGGCTAATCATCTAGACAAACAATTAGTGGAAGATGAGTACCATATGAATAAAATTAATGAGTATTTTACTTCTAG
GAACAGAACTATGACCGAAAATAATAAATTACAAGCAGTTATTATTGAAGGTTCTACCGTATTGAATAATGATTATGGCT
TTGCGGCTGGAATGTACTTAAAAGAAAATAATCATACCTACGTTTTGTTACCAGGCCCACCATCTGAAATGAAACCAATG
TTTACAAATTATGCTAACCCCTTACTTTTAAGTGAAAGTGGCGAGCAAAACATTTTAGAATCAAAAATTATGCGTTTTTT
TGGTATTGGAGAGTCACAATTAGCTACTGATTTAAACGATTTGATTGTCACGCAAGTCAACCCGACGATTGCGACATATG
CTGGTGATAATGAAGTCGTGGTTCGTATTACAGCGACAGCTAAAACAAAAGAAGAAGCAAGCAGGCTGGTGAAGGATACC
GAGGAGGAAGTATTGCGCCGAGATGGTAGCTTTTTATATGGATATGGAGAAGTTTCATTACCTGAATTAGTTACGGCGAT
GTTGCTTGAAAAAGAGCTAACCATCTCTGCTGCAGAAAGTTTCACTGCTGGTTTGTTCCAAGCAGAAATTGCTCGCTTTC
CTGGTATTTCGAAAATATTTAAAGGCGGTATGGTGACATACAGTGAAGAAATAAAACAATCCATATTACAAGTATCTCCC
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCGGAATGTGCGAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGCCCTGATAGTTTAGAAGGTCATCCTGCTGGTACTATTTGGATTGGAC
TGAGCGTTAAAGGTCATGAAGCAGAAGCTTTTCAGTTTGTTTATGGAAGAGATCGAAACCATAATCGCCGTCGTGCAGTA
AAACAAGGATTTCAGTTAATTAAACAATTTTTAGACGCGAATTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A823IQ78

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.345

98.792

0.507

  cinA Streptococcus pneumoniae TIGR4

49.048

100

0.498

  cinA Streptococcus mitis SK321

49.043

100

0.495

  cinA Streptococcus mutans UA159

49.272

99.517

0.49

  cinA Streptococcus pneumoniae Rx1

48.333

100

0.49

  cinA Streptococcus pneumoniae R6

48.333

100

0.49

  cinA Streptococcus pneumoniae D39

48.095

100

0.488

  cinA Streptococcus mitis NCTC 12261

48.325

100

0.488

  cinA Streptococcus suis isolate S10

39.078

99.517

0.389