Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LZE81_RS14975 Genome accession   NZ_CP090000
Coordinates   3462194..3463453 (+) Length   419 a.a.
NCBI ID   WP_060744725.1    Uniprot ID   -
Organism   Xanthomonas translucens strain B1FA     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3457194..3468453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZE81_RS14950 (LZE81_14950) - 3458090..3458272 (+) 183 WP_003477093.1 YhfG family protein -
  LZE81_RS14955 (LZE81_14955) - 3458269..3458886 (+) 618 WP_003477095.1 Fic family protein -
  LZE81_RS14960 (LZE81_14960) pilB 3458896..3460632 (-) 1737 WP_058363696.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LZE81_RS14965 (LZE81_14965) - 3460895..3461293 (+) 399 WP_196484464.1 hypothetical protein -
  LZE81_RS14970 (LZE81_14970) pilA/pilAI 3461378..3461809 (-) 432 WP_060744724.1 pilin Machinery gene
  LZE81_RS14975 (LZE81_14975) pilC 3462194..3463453 (+) 1260 WP_060744725.1 type II secretion system F family protein Machinery gene
  LZE81_RS14980 (LZE81_14980) - 3463460..3464323 (+) 864 WP_058359048.1 A24 family peptidase -
  LZE81_RS14985 (LZE81_14985) coaE 3464337..3464957 (+) 621 WP_058360087.1 dephospho-CoA kinase -
  LZE81_RS14990 (LZE81_14990) - 3465080..3466414 (-) 1335 WP_058360086.1 HAMP domain-containing sensor histidine kinase -
  LZE81_RS14995 (LZE81_14995) - 3466407..3467084 (-) 678 WP_003466405.1 response regulator transcription factor -
  LZE81_RS15000 (LZE81_15000) - 3467182..3467376 (-) 195 WP_229017631.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45666.92 Da        Isoelectric Point: 10.1825

>NTDB_id=639965 LZE81_RS14975 WP_060744725.1 3462194..3463453(+) (pilC) [Xanthomonas translucens strain B1FA]
MSATRSTVSKEPVARNISQQVPFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGSKISTKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVMAVALLVSSILLVWVVPQFEEVFKGFGAELPAFTQMIVAASRFMVSYWWI
LLILLIGTIGGFIFAYKRSPSMQHGMDRLILKVPVIGQIMHNSSVARFSRTLAVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=639965 LZE81_RS14975 WP_060744725.1 3462194..3463453(+) (pilC) [Xanthomonas translucens strain B1FA]
ATGTCCGCAACTCGTAGCACAGTATCCAAAGAACCCGTCGCACGCAATATCAGCCAGCAGGTCCCGTTCGTCTGGGAAGG
GACGGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGTGCGGAATTGCGCCGCC
AGGGCATCACCCCGTCGGTGGTCAAGCCGAAACCCAAGCCCCTGTTCGGCGCCGCCGGCAGCAAGATCAGTACCAAGGAC
ATTGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCGGGCGTCCCCATCGTGGGATCGCTGGAAATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGGCCAGGTCCGCACCGACATCGAAGGCGGCTCGTCGCTCTATGAAG
CGATCAGCAAGCATCCGGTCCAGTTCGATGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAAGGCGCGGGCGTGCTCGAA
ACGGTGCTGGAGACGGTCGCGACCTACAAGGAAAATATCGAGGCGTTGAAGGGTAAGATCAAGAAGGCCTTGTTCTATCC
AGCCATGGTCATGGCAGTCGCACTGCTGGTCAGTTCGATCCTGTTGGTATGGGTGGTGCCGCAGTTCGAGGAAGTATTCA
AGGGCTTTGGCGCGGAGCTACCGGCCTTTACCCAGATGATCGTGGCCGCCTCACGCTTCATGGTGTCTTATTGGTGGATA
CTGCTGATTCTGCTCATTGGCACCATTGGCGGCTTCATCTTCGCCTACAAGCGCTCACCATCGATGCAGCATGGCATGGA
CCGCTTGATCTTGAAGGTGCCAGTCATAGGCCAGATCATGCACAACAGCTCGGTAGCTCGCTTCTCACGGACCCTCGCGG
TGACCTTCCGCGCTGGCGTGCCGCTGGTCGAGGCGTTGGACATCGTCGCAGGCGCTACCGGCAACAGCGTCTACGAGAAA
GCCGTGCTGCGCATGCGCGACGACGTGTCGGTGGGCTACCCCGTCAACGTGGCGATGAAGCAGGCCAACCTGTTTCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAAGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCGTTGAGCAGCCTGCTGGAACCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTCGTCGGCATGTATCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

51.98

96.42

0.501
  pilC Pseudomonas stutzeri DSM 10701

52.525

94.511

0.496
  pilC Acinetobacter baumannii D1279779

51.117

96.181

0.492
  pilC Acinetobacter baylyi ADP1

50.62

96.181

0.487
  pilG Neisseria gonorrhoeae MS11

43.216

94.988

0.411
  pilC Vibrio cholerae strain A1552

42.222

96.659

0.408
  pilG Neisseria meningitidis 44/76-A

42.607

95.227

0.406
  pilC Vibrio campbellii strain DS40M4

41.353

95.227

0.394