Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LV507_RS05520 Genome accession   NZ_CP089999
Coordinates   1207929..1209188 (-) Length   419 a.a.
NCBI ID   WP_064522057.1    Uniprot ID   -
Organism   Xanthomonas translucens strain B8GF     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1202929..1214188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV507_RS05495 (LV507_05495) - 1203964..1204200 (+) 237 WP_003477111.1 hypothetical protein -
  LV507_RS05500 (LV507_05500) - 1204298..1204975 (+) 678 WP_003466405.1 response regulator transcription factor -
  LV507_RS05505 (LV507_05505) - 1204968..1206302 (+) 1335 WP_058360086.1 HAMP domain-containing sensor histidine kinase -
  LV507_RS05510 (LV507_05510) coaE 1206425..1207045 (-) 621 WP_058360087.1 dephospho-CoA kinase -
  LV507_RS05515 (LV507_05515) - 1207059..1207922 (-) 864 WP_058359048.1 A24 family peptidase -
  LV507_RS05520 (LV507_05520) pilC 1207929..1209188 (-) 1260 WP_064522057.1 type II secretion system F family protein Machinery gene
  LV507_RS05525 (LV507_05525) pilA 1209573..1209989 (+) 417 WP_128809130.1 pilin Machinery gene
  LV507_RS05530 (LV507_05530) - 1210081..1210449 (-) 369 WP_153476696.1 hypothetical protein -
  LV507_RS05535 (LV507_05535) pilB 1210712..1212448 (+) 1737 WP_058360091.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LV507_RS05540 (LV507_05540) - 1212458..1213075 (-) 618 WP_003477095.1 Fic family protein -
  LV507_RS05545 (LV507_05545) - 1213072..1213254 (-) 183 WP_003477093.1 YhfG family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45493.65 Da        Isoelectric Point: 10.1825

>NTDB_id=639940 LV507_RS05520 WP_064522057.1 1207929..1209188(-) (pilC) [Xanthomonas translucens strain B8GF]
MSATRSAVSKEPVARTISQQVPFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGSAGSKISAKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENTEALKGKIKKALFYPAAVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWL
LLIVLVGSIVGFVFAYKRSPSMQHGMDRLILKVPIIGQIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=639940 LV507_RS05520 WP_064522057.1 1207929..1209188(-) (pilC) [Xanthomonas translucens strain B8GF]
ATGTCCGCAACTCGTAGCGCAGTATCCAAAGAACCCGTCGCACGCACTATCAGCCAGCAGGTGCCGTTCGTCTGGGAAGG
GACGGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGTGCGGAATTGCGCCGCC
AGGGCATCACCCCGTCGGTGGTCAAGCCGAAACCCAAGCCCCTGTTCGGCTCCGCCGGCAGCAAGATCAGCGCGAAGGAC
ATTGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCGGGCGTCCCCATCGTGGGATCGCTGGAAATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGGCCAGGTCCGCACCGACATCGAAGGCGGCTCGTCGCTCTATGAAG
CGATCAGCAAGCATCCGGTCCAGTTCGATGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAAGGCGCCGGTGTACTCGAA
ACCGTGCTGGAGACGGTAGCCACCTACAAAGAAAACACCGAGGCGCTGAAGGGCAAGATCAAGAAAGCCTTGTTCTATCC
GGCCGCGGTCATGGCCGTGGCGCTTCTGGTCAGCTCGATCTTGCTGGTGTGGGTGGTCCCGCAATTCGAGGATGTCTTCA
AAGGGTTTGGCGCGGAGTTACCCGCATTCACTCAGATGATCGTCGCCGCTTCACGCTTTATGGTGGCTTATTGGTGGCTC
CTGCTGATCGTGCTGGTTGGCAGCATCGTCGGCTTCGTCTTCGCCTACAAGCGCTCGCCGTCGATGCAGCACGGCATGGA
CCGGCTGATCCTGAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCCGTGGCCCGCTTCTCGCGGACACTGGGCG
TCACCTTCCGCGCCGGCGTCCCGTTGGTGGAAGCGCTGGACATCGTCGCCGGCGCCACCGGCAACAGCGTCTACGAAAAG
GCCGTGCTGCGCATGCGCGACGACGTGTCGGTGGGCTACCCGGTCAATGTGGCGATGAAACAGGCCAACCTGTTTCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAAGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCGTTGAGCAGCCTGCTGGAACCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTCGTCGGCATGTATCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.511

0.508
  pilC Legionella pneumophila strain ERS1305867

52.525

94.511

0.496
  pilC Acinetobacter baylyi ADP1

50.868

96.181

0.489
  pilC Acinetobacter baumannii D1279779

50.868

96.181

0.489
  pilG Neisseria gonorrhoeae MS11

43.216

94.988

0.411
  pilC Vibrio cholerae strain A1552

42.222

96.659

0.408
  pilG Neisseria meningitidis 44/76-A

42.714

94.988

0.406
  pilC Vibrio campbellii strain DS40M4

39.901

96.897

0.387
  pilC Thermus thermophilus HB27

38.75

95.465

0.37