Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LKW29_RS15770 Genome accession   NZ_CP089993
Coordinates   3057128..3058366 (-) Length   412 a.a.
NCBI ID   WP_000990713.1    Uniprot ID   -
Organism   Bacillus anthracis strain BF5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3052128..3063366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LKW29_RS15745 (LKW29_15745) spoVS 3052210..3052470 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  LKW29_RS15750 (LKW29_15750) - 3052620..3053414 (-) 795 WP_001221091.1 TIGR00282 family metallophosphoesterase -
  LKW29_RS15755 (LKW29_15755) rny 3053580..3055142 (-) 1563 WP_000099773.1 ribonuclease Y -
  LKW29_RS15760 (LKW29_15760) - 3055625..3056047 (-) 423 Protein_3128 DNA recombination/repair protein RecA -
  LKW29_RS15765 (LKW29_15765) recA 3056375..3056983 (-) 609 Protein_3129 recombinase RecA -
  LKW29_RS15770 (LKW29_15770) cinA 3057128..3058366 (-) 1239 WP_000990713.1 competence/damage-inducible protein CinA Machinery gene
  LKW29_RS15775 (LKW29_15775) pgsA 3058387..3058965 (-) 579 WP_001052973.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LKW29_RS15780 (LKW29_15780) - 3059029..3059940 (-) 912 WP_000137488.1 helix-turn-helix domain-containing protein -
  LKW29_RS15785 (LKW29_15785) - 3059962..3060747 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  LKW29_RS15790 (LKW29_15790) - 3060887..3061135 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  LKW29_RS15795 (LKW29_15795) ymfI 3061211..3061924 (-) 714 WP_000759617.1 elongation factor P 5-aminopentanone reductase -
  LKW29_RS15800 (LKW29_15800) yfmH 3062028..3063314 (-) 1287 WP_000411959.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45381.62 Da        Isoelectric Point: 4.8876

>NTDB_id=639785 LKW29_RS15770 WP_000990713.1 3057128..3058366(-) (cinA) [Bacillus anthracis strain BF5]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHVED
LILERVGEFFYGYDQEFLHDKAIVLLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LFTDGAVSKECARYLAENVKELLEADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=639785 LKW29_RS15770 WP_000990713.1 3057128..3058366(-) (cinA) [Bacillus anthracis strain BF5]
ATGAATGCGGAGATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGGGATAATAACAAGCGACTGCAGCAGGCGATTG
AAGTTGCAGAGGAACGTGCGGATATGCTCATTTTCACAGGTGGATTAGGACCGACGAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCAATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATTGCCCCGCTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCATGATAAGGCGATAGTGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGTGGTGTCATTTGTTATCATAATGACGTGAAGCAGCATGTTTTACATGTACCTGAGGAAGTG
TTGTTTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAGAAGCGGATAT
CGGGATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAACCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGTGGAAGTCGCCAACAAATTAGAGAACGCTCAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAAATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.78

99.515

0.585
  cinA Streptococcus mitis SK321

47.017

100

0.478
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379