Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LVW35_RS03905 Genome accession   NZ_CP089985
Coordinates   864468..865676 (-) Length   402 a.a.
NCBI ID   WP_233893820.1    Uniprot ID   -
Organism   Pseudomonas sp. HN11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 859468..870676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVW35_RS03865 (LVW35_03865) - 859499..860797 (-) 1299 WP_233893812.1 NAD(P)/FAD-dependent oxidoreductase -
  LVW35_RS03870 (LVW35_03870) - 860858..861031 (-) 174 WP_233893814.1 DUF3094 family protein -
  LVW35_RS03875 (LVW35_03875) - 861087..861716 (-) 630 WP_010213242.1 DUF1780 domain-containing protein -
  LVW35_RS03880 (LVW35_03880) - 861820..862509 (+) 690 WP_233893816.1 energy-coupling factor ABC transporter permease -
  LVW35_RS03885 (LVW35_03885) - 862576..862791 (+) 216 WP_003171680.1 hypothetical protein -
  LVW35_RS03890 (LVW35_03890) yacG 862788..862988 (-) 201 WP_003188437.1 DNA gyrase inhibitor YacG -
  LVW35_RS03895 (LVW35_03895) coaE 862985..863608 (-) 624 WP_233893819.1 dephospho-CoA kinase -
  LVW35_RS03900 (LVW35_03900) pilD 863605..864471 (-) 867 WP_326489602.1 A24 family peptidase Machinery gene
  LVW35_RS03905 (LVW35_03905) pilC 864468..865676 (-) 1209 WP_233893820.1 type II secretion system F family protein Machinery gene
  LVW35_RS03910 (LVW35_03910) - 865878..866291 (+) 414 WP_326489608.1 pilin -
  LVW35_RS03915 (LVW35_03915) - 866328..867728 (+) 1401 WP_233893822.1 O-antigen ligase family protein -
  LVW35_RS03925 (LVW35_03925) - 867994..868299 (+) 306 WP_033903347.1 DUF6388 family protein -
  LVW35_RS03930 (LVW35_03930) nadC 868384..869232 (-) 849 WP_233893823.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43318.66 Da        Isoelectric Point: 10.3223

>NTDB_id=639698 LVW35_RS03905 WP_233893820.1 864468..865676(-) (pilC) [Pseudomonas sp. HN11]
MDNASTIYAWEGINRKGRRVSGQTTGHTLALVKTQLRQQGISPCHVRKKSTVLSSLAPSIKSTDITLLTRQLATLLKAGI
PLLQAFDIIGEGFDNRAVRQLVQSLKQAIAAGSSLAEALRKQPRHFDGLYCNLVAAGEQAGALETLLERVAIHREKSEQL
RARIKKAMTYPIAVLVVASLVTGVLLIHVVPQFQNLFAGVDGKLPAFTLRVIALSEYMQQAWWLVALGIGAGGAGLRYAY
RTQASLRLWLDARLLKAPLAGKLLRKSAVARYARTLSTTFAAGVPLVQALDSVAGAVGSGPFKQAIEHMRHDVSTGIQLN
QSMVASGLFPSMAIQMTAIGEESGTLDRMLEKVASHYEADVDNLVDNLTTLMEPLIMVILGSIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=639698 LVW35_RS03905 WP_233893820.1 864468..865676(-) (pilC) [Pseudomonas sp. HN11]
ATGGACAACGCTTCAACGATCTACGCCTGGGAAGGCATCAACCGCAAAGGACGCAGGGTGTCCGGTCAGACCACGGGGCA
CACCCTTGCTCTGGTCAAGACTCAGTTACGTCAACAGGGCATCAGCCCATGTCATGTGCGCAAGAAATCTACTGTGCTAT
CGAGCCTCGCCCCCTCGATCAAATCAACGGACATCACCCTGCTCACTCGGCAATTGGCCACGCTGCTGAAAGCCGGAATT
CCTCTTCTGCAAGCCTTCGACATCATCGGCGAAGGCTTCGACAACCGCGCCGTACGTCAGTTGGTGCAAAGTTTGAAACA
GGCGATCGCTGCCGGCTCCAGCCTGGCCGAAGCGCTGCGCAAACAACCTCGCCACTTCGATGGACTGTATTGCAACCTGG
TGGCCGCCGGCGAACAAGCCGGGGCACTTGAGACGCTGCTGGAGCGCGTGGCGATCCACCGTGAAAAGAGCGAGCAGTTG
AGGGCCAGGATCAAAAAAGCCATGACCTATCCGATCGCAGTATTGGTAGTAGCCAGCCTGGTCACCGGGGTTCTGTTGAT
TCATGTCGTGCCGCAGTTCCAGAACCTGTTTGCCGGGGTCGATGGCAAGCTGCCGGCGTTCACGTTACGGGTGATTGCAC
TGTCCGAGTACATGCAGCAAGCCTGGTGGCTCGTAGCGCTGGGCATAGGTGCGGGAGGCGCGGGGTTGCGCTACGCCTAT
CGTACCCAGGCCTCTTTGCGCCTCTGGCTGGACGCCCGTTTGTTGAAAGCGCCGCTGGCAGGCAAACTGCTGAGAAAGTC
AGCAGTGGCCCGCTACGCCCGTACGCTTTCCACCACCTTCGCCGCCGGTGTTCCGCTGGTACAAGCCCTGGATTCTGTGG
CGGGTGCCGTCGGCTCCGGGCCGTTCAAACAGGCAATCGAACATATGCGACATGATGTATCCACTGGCATTCAATTGAAC
CAATCCATGGTTGCCAGCGGCCTGTTTCCCAGTATGGCGATACAGATGACAGCCATCGGCGAAGAGTCGGGCACACTGGA
TCGCATGCTGGAAAAGGTCGCCAGCCATTACGAAGCCGATGTGGACAACCTCGTCGACAATCTAACCACCCTGATGGAGC
CGCTGATCATGGTGATACTGGGGAGTATTGTCGGCGCGCTGGTGATCGCCATGTACTTGCCGGTCTTCCAGTTGGGGAGC
GCGTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60

99.502

0.597
  pilC Acinetobacter baumannii D1279779

52.152

98.259

0.512
  pilC Acinetobacter baylyi ADP1

51.01

98.507

0.502
  pilC Legionella pneumophila strain ERS1305867

48.744

99.005

0.483
  pilC Vibrio cholerae strain A1552

41.371

98.01

0.405
  pilG Neisseria meningitidis 44/76-A

40.992

95.274

0.391
  pilG Neisseria gonorrhoeae MS11

40.945

94.776

0.388
  pilC Vibrio campbellii strain DS40M4

39.34

98.01

0.386