Detailed information NTG0639697

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LVW35_RS03900
• Genome accession: NZ_CP089985
• Coordinates: 863605..864471 (-)
• Length: 288 a.a.
• NCBI ID: WP_326489602.1
• Uniprot ID: -
• Organism: Pseudomonas sp. HN11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 858605..869471

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVW35_RS03865 (LVW35_03865)	-	859499..860797 (-)	1299	WP_233893812.1	NAD(P)/FAD-dependent oxidoreductase	-
LVW35_RS03870 (LVW35_03870)	-	860858..861031 (-)	174	WP_233893814.1	DUF3094 family protein	-
LVW35_RS03875 (LVW35_03875)	-	861087..861716 (-)	630	WP_010213242.1	DUF1780 domain-containing protein	-
LVW35_RS03880 (LVW35_03880)	-	861820..862509 (+)	690	WP_233893816.1	energy-coupling factor ABC transporter permease	-
LVW35_RS03885 (LVW35_03885)	-	862576..862791 (+)	216	WP_003171680.1	hypothetical protein	-
LVW35_RS03890 (LVW35_03890)	yacG	862788..862988 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
LVW35_RS03895 (LVW35_03895)	coaE	862985..863608 (-)	624	WP_233893819.1	dephospho-CoA kinase	-
LVW35_RS03900 (LVW35_03900)	pilD	863605..864471 (-)	867	WP_326489602.1	A24 family peptidase	Machinery gene
LVW35_RS03905 (LVW35_03905)	pilC	864468..865676 (-)	1209	WP_233893820.1	type II secretion system F family protein	Machinery gene
LVW35_RS03910 (LVW35_03910)	-	865878..866291 (+)	414	WP_326489608.1	pilin	-
LVW35_RS03915 (LVW35_03915)	-	866328..867728 (+)	1401	WP_233893822.1	O-antigen ligase family protein	-
LVW35_RS03925 (LVW35_03925)	-	867994..868299 (+)	306	WP_033903347.1	DUF6388 family protein	-
LVW35_RS03930 (LVW35_03930)	nadC	868384..869232 (-)	849	WP_233893823.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31492.55 Da
• Isoelectric Point: 7.3603

>NTDB_id=639697 LVW35_RS03900 WP_326489602.1 863605..864471(-) (pilD) [Pseudomonas sp. HN11]
MSLLLGDCPGAFALMAGVLGLIVGSFINVLAWRLPKMLERDWRAQAHEVLGIPAEPCGPTYNLMHPNSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAYCQGAISARYPLTELACGLLSAWVAWHFGVGWQAGAVLVLTWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIVNGFGLLTTLPDALWGAVIGYLSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVF
VGLILMRLHKAQASAPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=639697 LVW35_RS03900 WP_326489602.1 863605..864471(-) (pilD) [Pseudomonas sp. HN11]
TTGAGCCTGCTGCTGGGTGACTGCCCAGGGGCCTTCGCCTTGATGGCAGGCGTGCTGGGGCTGATCGTCGGCAGTTTTAT
AAACGTGCTGGCGTGGCGCCTGCCGAAAATGCTCGAACGGGATTGGCGCGCCCAGGCCCATGAAGTGCTCGGCATACCCG
CTGAACCCTGCGGCCCAACCTACAACCTGATGCACCCCAACTCTTGCTGCCCGCACTGCAACCATCCCATACGTCCCTGG
GAAAATATCCCACTGCTGAGTTACCTGTTTCTCAGAGGTCGCTGCGCCTATTGCCAAGGGGCGATCAGCGCCCGCTATCC
ACTGACTGAACTGGCGTGCGGGTTGCTCTCGGCCTGGGTGGCCTGGCATTTCGGCGTTGGCTGGCAGGCGGGCGCAGTGC
TGGTGCTGACCTGGGGGTTGCTGGCGATGAGCCTGATCGACGCGGACCATCAATTGCTGCCGGATGTGCTGGTGATGCCG
TTGCTGTGGTTGGGACTGATCGTCAACGGCTTCGGCTTGCTGACCACACTGCCTGATGCCCTTTGGGGCGCCGTGATCGG
GTACCTGAGCCTGTGGAGTGTGTTCTGGCTGTTCAAGCTGGTCACCGGTAAGGACGGCATGGGCCACGGCGACTTCAAGT
TACTGGCGCTGCTTGGTGCCTGGGGCGGCTGGCAGATCCTGCCGATGACACTGTTGATGTCGTCGCTGGTCGGCGTGTTC
GTGGGTCTGATCTTGATGCGTCTGCACAAAGCCCAAGCGTCGGCACCGATGCCGTTTGGTCCGTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.878	96.528	0.51
pilD	Vibrio campbellii strain DS40M4	50.179	96.875	0.486
pilD	Acinetobacter baumannii D1279779	48.175	95.139	0.458
pilD	Acinetobacter nosocomialis M2	48.175	95.139	0.458
pilD	Neisseria gonorrhoeae MS11	51.562	88.889	0.458