Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LVW35_RS01980 Genome accession   NZ_CP089985
Coordinates   428636..429961 (+) Length   441 a.a.
NCBI ID   WP_233896381.1    Uniprot ID   -
Organism   Pseudomonas sp. HN11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 423636..434961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVW35_RS01960 (LVW35_01960) - 423726..426188 (-) 2463 WP_233893456.1 penicillin-binding protein 1A -
  LVW35_RS01965 (LVW35_01965) pilM 426406..427059 (+) 654 WP_233893457.1 type IV pilus assembly protein PilM -
  LVW35_RS01970 (LVW35_01970) - 427056..427610 (+) 555 WP_233893458.1 PilN domain-containing protein -
  LVW35_RS01975 (LVW35_01975) - 427607..428566 (+) 960 WP_233893459.1 pilus assembly protein PilP -
  LVW35_RS01980 (LVW35_01980) pilQ 428636..429961 (+) 1326 WP_233896381.1 type IV pilus secretin PilQ family protein Machinery gene
  LVW35_RS01985 (LVW35_01985) aroK 429966..430484 (+) 519 WP_010213757.1 shikimate kinase AroK -
  LVW35_RS01990 (LVW35_01990) aroB 430610..431710 (+) 1101 WP_233893460.1 3-dehydroquinate synthase -
  LVW35_RS01995 (LVW35_01995) - 431721..433286 (+) 1566 WP_233893461.1 AAA family ATPase -

Sequence

Protein


Download         Length: 441 a.a.        Molecular weight: 47975.97 Da        Isoelectric Point: 4.8179

>NTDB_id=639696 LVW35_RS01980 WP_233896381.1 428636..429961(+) (pilQ) [Pseudomonas sp. HN11]
MAAAVPNRVDLIQLPPPVNATLSAYTGDKLNLNFQSIELRTALQQIADVAGLNLVASDDVQGTITLRLKDVPWDQALDLV
LQAKGLDKRLKAGVLLVAPAEELAARELLTLESRKQMAELAPLRRELLQVNYAKAADLAKLFQSVTGLEGVTDERGSVAV
DDRTNNIIAYQTGERLEELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGARWGGRLNRGNWGAGGIPKPLPEGAEPPQ
NPPSSPFVDLGSFTGTSGLGIAYITDNLLLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQESSSSGATSV
SFKEASLSLEVTPQITPDDRVIMEVKVTKDEPDYLNKLNDVPPIKKNEVNAKVLVKDGETIVIGGVFSNTQSKVVDKVPF
LGDVPYLGRLFRRDVLAEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 1326 bp        

>NTDB_id=639696 LVW35_RS01980 WP_233896381.1 428636..429961(+) (pilQ) [Pseudomonas sp. HN11]
ATGGCTGCTGCTGTGCCCAATCGCGTGGACCTGATTCAGTTGCCACCGCCTGTTAACGCCACGTTGAGTGCCTACACGGG
TGACAAGCTCAACCTCAACTTCCAGAGCATTGAGTTGCGCACGGCGTTGCAACAAATCGCCGATGTGGCGGGCCTCAATC
TGGTGGCGAGCGACGATGTGCAAGGCACGATCACCCTGCGCCTCAAGGATGTGCCGTGGGACCAGGCGTTGGACTTGGTG
CTGCAAGCCAAGGGCCTGGATAAGCGGCTAAAGGCCGGCGTACTACTGGTAGCGCCCGCAGAAGAGTTGGCCGCGCGTGA
ACTGCTGACCCTGGAGTCGCGCAAGCAAATGGCTGAACTGGCGCCATTGCGCCGTGAGTTACTGCAGGTCAATTACGCCA
AGGCTGCAGACCTGGCCAAGCTGTTCCAGTCGGTCACGGGTCTGGAGGGCGTGACCGACGAGCGAGGTTCGGTGGCGGTG
GACGATCGCACCAACAACATCATCGCCTACCAGACCGGGGAGCGGCTGGAGGAGTTGCGGCGAATCGTGGCGCAGCTGGA
TATTCCGGTGCGCCAGGTGATGATCGAGGCGCGGATTGTCGAGGCCAATGTCGATTACGACAAAAGCCTGGGCGCGCGCT
GGGGTGGGCGGCTCAATCGCGGCAACTGGGGCGCGGGCGGCATTCCAAAGCCCCTGCCCGAAGGCGCGGAACCGCCGCAA
AACCCACCCAGTTCACCTTTTGTGGATTTGGGATCATTCACTGGCACCTCGGGCCTGGGCATTGCCTATATCACCGACAA
CCTGCTGCTGGACCTGGAGCTCACCGCGATGGAGAAAACCGGCAACGGTGAAATCGTCTCGCAACCCAAGGTGGTCACGT
CCGACAAGGAAACCGCGCGCATCCTCAAGGGCACCGAGATTCCCTACCAGGAATCCAGCTCCAGCGGCGCGACATCAGTG
TCGTTCAAGGAAGCCTCGCTGTCGCTTGAGGTCACCCCGCAAATCACCCCTGACGACCGCGTGATCATGGAGGTCAAGGT
CACCAAGGATGAGCCCGACTATCTGAACAAACTCAATGACGTGCCGCCAATCAAGAAGAACGAGGTCAATGCCAAGGTGT
TGGTCAAGGATGGCGAGACCATCGTCATCGGCGGGGTTTTCTCCAATACCCAAAGCAAAGTGGTAGATAAAGTGCCATTT
TTAGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGCGATGTGCTGGCGGAGAAAAAATCCGAGCTGCTGGTATTCCT
GACTCCGCGTATTATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(127-192)

Secretin and TonB N terminus short domain (STN)

(53-99)

Bacterial type II and III secretion system protein (Secretin)

(276-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

71.854

99.093

0.712
  comQ Acinetobacter baylyi ADP1

41.004

100

0.444
  pilQ Acinetobacter baumannii strain A118

40.733

100

0.429
  pilQ Acinetobacter baumannii D1279779

40.733

100

0.429
  pilQ Vibrio campbellii strain DS40M4

43.972

95.918

0.422
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

43.78

94.785

0.415
  pilQ Vibrio cholerae strain A1552

43.78

94.785

0.415
  pilQ Legionella pneumophila strain Lp02

43.333

95.238

0.413
  pilQ Legionella pneumophila strain ERS1305867

43.23

95.465

0.413