Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LU294_RS08570 Genome accession   NZ_CP089743
Coordinates   1630607..1631845 (+) Length   412 a.a.
NCBI ID   WP_109630080.1    Uniprot ID   -
Organism   Bacillus paranthracis strain SHOU-BC01     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1625607..1636845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU294_RS08540 (LU294_08540) yfmH 1625644..1626930 (+) 1287 WP_000411945.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LU294_RS08545 (LU294_08545) ymfI 1627034..1627747 (+) 714 WP_000759622.1 elongation factor P 5-aminopentanone reductase -
  LU294_RS08550 (LU294_08550) - 1627823..1628071 (+) 249 WP_000114454.1 DUF3243 domain-containing protein -
  LU294_RS08555 (LU294_08555) - 1628211..1628996 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  LU294_RS08560 (LU294_08560) - 1629018..1629944 (+) 927 WP_000137486.1 helix-turn-helix domain-containing protein -
  LU294_RS08565 (LU294_08565) pgsA 1630008..1630586 (+) 579 WP_001052963.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LU294_RS08570 (LU294_08570) cinA 1630607..1631845 (+) 1239 WP_109630080.1 competence/damage-inducible protein CinA Machinery gene
  LU294_RS08575 (LU294_08575) recA 1631990..1632598 (+) 609 Protein_1686 recombinase RecA -
  LU294_RS08580 (LU294_08580) - 1632925..1633347 (+) 423 Protein_1687 recombinase RecA -
  LU294_RS08585 (LU294_08585) rny 1633833..1635398 (+) 1566 WP_000099355.1 ribonuclease Y -
  LU294_RS08590 (LU294_08590) - 1635563..1636357 (+) 795 WP_001221098.1 TIGR00282 family metallophosphoesterase -
  LU294_RS08595 (LU294_08595) spoVS 1636506..1636766 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45389.62 Da        Isoelectric Point: 5.2165

>NTDB_id=638441 LU294_RS08570 WP_109630080.1 1630607..1631845(+) (cinA) [Bacillus paranthracis strain SHOU-BC01]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNAHEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVRELLKADIGISFTGVAGPDASEHKEPGTVFVGLAMKDEPTVVFPLNLSGSRQQIRERSAKS
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=638441 LU294_RS08570 WP_109630080.1 1630607..1631845(+) (cinA) [Bacillus paranthracis strain SHOU-BC01]
ATGAACGCTGAAATTATTGCGGTTGGAACAGAATTATTACTTGGACAAATTGCAAATACGAACGCCCAGTTTTTGTCTGA
AAAGTTAGCTTCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGTGATAATAACAAGCGACTGCAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGATATGCTCATTTTCACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTTGTTTTGGATGGGGCGACTGTATTTGCAAATGATCATGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCGATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATCGCCCCGCTTGCCAATG
ATGGAGAAGTGACATTACGTTTAACGGCTAAACATCAAAATGCTCATGAAGCGGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTTGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTACATTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTTGGTAATCAAGTAACAGAAAACGCTGGTG
TGTCTTCCGTATTTAAAGGCGGTGTCATTTGTTACCATAATGATGTGAAGCAACATGTATTACATGTACCTGAGGAAGTC
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAGAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACTGTATTTGTTGGATTGGCGA
TGAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATCT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.738

100

0.587
  cinA Streptococcus mitis SK321

47.494

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.255

100

0.481
  cinA Streptococcus pneumoniae Rx1

46.778

100

0.476
  cinA Streptococcus pneumoniae R6

46.778

100

0.476
  cinA Streptococcus pneumoniae D39

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

46.482

96.602

0.449
  cinA Streptococcus suis isolate S10

41.534

91.748

0.381