Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LVC68_RS15700 Genome accession   NZ_CP089742
Coordinates   3389513..3390031 (+) Length   172 a.a.
NCBI ID   WP_209423584.1    Uniprot ID   -
Organism   Melaminivora jejuensis strain KACC 19629     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3384513..3395031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVC68_RS15660 (LVC68_15660) - 3385337..3385945 (+) 609 WP_209424164.1 FHA domain-containing protein -
  LVC68_RS15665 (LVC68_15665) - 3386026..3386109 (+) 84 WP_232654404.1 hypothetical protein -
  LVC68_RS15670 (LVC68_15670) - 3386156..3387412 (+) 1257 WP_209423586.1 RNA-guided endonuclease TnpB family protein -
  LVC68_RS15675 (LVC68_15675) - 3387490..3387999 (+) 510 WP_232653791.1 hypothetical protein -
  LVC68_RS15685 (LVC68_15685) pilE 3387957..3388484 (+) 528 WP_269783622.1 pilin Machinery gene
  LVC68_RS15690 (LVC68_15690) - 3388606..3389379 (+) 774 WP_209423585.1 hypothetical protein -
  LVC68_RS15700 (LVC68_15700) pilE 3389513..3390031 (+) 519 WP_209423584.1 pilin Machinery gene
  LVC68_RS15705 (LVC68_15705) - 3390467..3390922 (+) 456 WP_209423583.1 DUF4351 domain-containing protein -
  LVC68_RS15710 (LVC68_15710) - 3391014..3391472 (+) 459 WP_209423582.1 carboxymuconolactone decarboxylase family protein -
  LVC68_RS15715 (LVC68_15715) - 3391484..3392083 (-) 600 WP_232653793.1 Uma2 family endonuclease -
  LVC68_RS15725 (LVC68_15725) - 3392339..3392755 (-) 417 WP_209423580.1 type II toxin-antitoxin system HicB family antitoxin -
  LVC68_RS15730 (LVC68_15730) - 3392764..3392949 (-) 186 WP_209423579.1 type II toxin-antitoxin system HicA family toxin -
  LVC68_RS15735 (LVC68_15735) moaC 3393002..3393538 (-) 537 WP_209423578.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 17500.91 Da        Isoelectric Point: 7.7769

>NTDB_id=638417 LVC68_RS15700 WP_209423584.1 3389513..3390031(+) (pilE) [Melaminivora jejuensis strain KACC 19629]
MRNTLQAGFTLIELMIVVAIIGILAATALPAYQDYTARAKMAEILVAGNAGKELVSEGFQSGGYTGVGLAATEYNARPIA
QKQSKFVANIQIDTTTGVVTVTSAGAASGLPTDAQSKTLLLTPNVQGAALSATSVGAIDWACASTSNTTAGNRSLVSGTG
TLPSKYVPSECR

Nucleotide


Download         Length: 519 bp        

>NTDB_id=638417 LVC68_RS15700 WP_209423584.1 3389513..3390031(+) (pilE) [Melaminivora jejuensis strain KACC 19629]
ATGAGAAACACCCTGCAGGCCGGCTTCACCCTGATCGAGCTGATGATCGTGGTAGCCATTATTGGCATCCTGGCAGCCAC
GGCTCTGCCTGCCTATCAGGACTACACGGCCCGCGCCAAGATGGCGGAAATCCTGGTGGCCGGCAATGCCGGCAAGGAGC
TGGTGTCCGAGGGCTTCCAGTCCGGGGGCTATACCGGCGTGGGCCTGGCGGCCACCGAGTACAACGCCCGCCCGATTGCC
CAGAAGCAGTCCAAGTTCGTCGCCAACATCCAGATCGACACGACCACGGGCGTGGTCACCGTGACCAGCGCCGGCGCGGC
CTCCGGCCTGCCTACGGATGCACAAAGCAAGACGCTGCTCCTCACCCCCAACGTGCAGGGCGCGGCGCTGAGCGCCACCT
CCGTCGGCGCCATCGACTGGGCCTGCGCCTCGACCAGCAACACGACTGCCGGCAACCGCAGTCTGGTTTCGGGCACGGGC
ACCCTGCCCAGCAAGTACGTCCCCAGCGAGTGCCGCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(37-172)

Prokaryotic N-terminal methylation motif (N_methyl)

(6-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

46.237

100

0.5
  pilA Ralstonia pseudosolanacearum GMI1000

40.678

100

0.419
  pilE Neisseria gonorrhoeae strain FA1090

38.068

100

0.39
  pilA2 Legionella pneumophila str. Paris

39.521

97.093

0.384
  pilA2 Legionella pneumophila strain ERS1305867

37.931

100

0.384
  comP Acinetobacter baylyi ADP1

38.15

100

0.384
  pilE Neisseria gonorrhoeae MS11

36.158

100

0.372