Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EMQU_RS13505 Genome accession   NC_022878
Coordinates   2856688..2857932 (-) Length   414 a.a.
NCBI ID   WP_023520517.1    Uniprot ID   A0AAI8R964
Organism   Enterococcus mundtii QU 25     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2851688..2862932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EMQU_RS13490 (EMQU_2750) - 2852488..2853144 (-) 657 WP_023520516.1 hypothetical protein -
  EMQU_RS13495 (EMQU_2751) rny 2853697..2855253 (-) 1557 WP_010734077.1 ribonuclease Y -
  EMQU_RS13500 (EMQU_2752) recA 2855542..2856582 (-) 1041 WP_010734076.1 recombinase RecA Machinery gene
  EMQU_RS13505 (EMQU_2753) cinA 2856688..2857932 (-) 1245 WP_023520517.1 competence/damage-inducible protein A Machinery gene
  EMQU_RS13510 (EMQU_2755) pgsA 2858159..2858737 (-) 579 WP_019723896.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EMQU_RS13515 (EMQU_2756) - 2858909..2859799 (-) 891 WP_023520519.1 helix-turn-helix domain-containing protein -
  EMQU_RS13520 (EMQU_2757) yfmH 2860095..2861384 (-) 1290 WP_023520520.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  EMQU_RS13525 (EMQU_2758) yfmF 2861377..2862645 (-) 1269 WP_023520521.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45306.79 Da        Isoelectric Point: 5.1991

>NTDB_id=63682 EMQU_RS13505 WP_023520517.1 2856688..2857932(-) (cinA) [Enterococcus mundtii QU 25]
MKSEIIAVGTELLLGQVVNTNATFLSEQLADLGIDVYYHTVVGDNPTRLEELLQLAESRSELIILCGGLGPTEDDLTKEV
VAKHLDRKLIQNTEGYKKLLAFFETTKRKMTDNNLQQSQIIEGGTPLPNRTGLALGTFYQTKSNAYLLLPGPPSELKPMF
VEQVRPLLEQQFPSEEKLISKVLRFYGIGESQLVTDLKDLIATQINPTIAPYAKPNEVTLRLTVKTSDIHAGNQALHALE
EKIQARVGEYFYGYGDDYSLPQAVVDLLKEQGKTVTAVESLTAGGFQSALGAIPGVSQVFSGGFVTYSAETKAKLLGIDP
DLLEQFGTVSKECAEQMAIRARQLVGTDYAVAFTGVAGPDTLEGHPAGTVWLAVASKEGVETKECHFTRDRSAIRNSAIM
QGFDLLRKQLLRKK

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=63682 EMQU_RS13505 WP_023520517.1 2856688..2857932(-) (cinA) [Enterococcus mundtii QU 25]
ATGAAATCTGAAATCATAGCAGTAGGAACAGAATTATTACTTGGACAAGTCGTGAATACGAATGCGACATTTTTATCAGA
ACAGTTAGCAGATCTAGGAATCGATGTCTATTATCACACAGTTGTCGGGGATAATCCGACTCGTTTGGAGGAGTTACTCC
AGTTAGCTGAATCAAGAAGTGAACTAATCATTTTATGTGGTGGATTAGGACCAACAGAAGATGATTTAACAAAAGAAGTT
GTTGCAAAACACCTTGATAGAAAACTGATCCAAAATACAGAAGGTTACAAGAAACTGTTGGCATTTTTCGAAACGACAAA
AAGAAAAATGACGGATAACAATTTACAACAGTCCCAAATCATTGAAGGTGGCACACCATTACCTAATCGAACTGGCTTAG
CGTTAGGCACGTTTTATCAAACGAAAAGCAATGCCTATCTTTTACTTCCTGGGCCACCGAGTGAGTTGAAGCCGATGTTT
GTAGAACAAGTACGCCCCTTGTTAGAACAACAATTCCCTTCAGAAGAAAAACTGATCTCAAAAGTGTTGCGCTTCTATGG
CATTGGTGAATCACAATTAGTAACCGATCTAAAAGACTTGATTGCTACACAAATCAATCCCACGATTGCTCCTTATGCCA
AACCAAATGAAGTCACACTGAGATTGACCGTCAAAACGTCAGACATCCATGCAGGGAATCAAGCGTTGCACGCACTAGAA
GAAAAAATCCAAGCCCGTGTCGGTGAATATTTTTATGGCTATGGGGATGACTATTCGTTGCCACAAGCCGTCGTGGATCT
ACTGAAAGAACAGGGGAAGACAGTCACAGCAGTTGAGAGTTTGACAGCCGGAGGCTTTCAATCCGCACTAGGAGCGATTC
CTGGCGTCTCTCAAGTCTTTTCTGGTGGTTTTGTGACTTATTCAGCAGAGACCAAAGCAAAGCTCTTAGGCATCGATCCA
GACCTGTTAGAGCAGTTTGGCACAGTCAGTAAAGAATGCGCCGAACAAATGGCGATTCGAGCACGCCAACTCGTTGGTAC
AGATTATGCCGTAGCGTTTACTGGCGTAGCGGGACCCGACACATTAGAAGGACATCCTGCGGGTACAGTTTGGCTTGCCG
TTGCATCAAAAGAAGGCGTAGAAACAAAAGAATGTCACTTCACAAGAGACCGTTCGGCAATCAGAAATAGCGCGATTATG
CAAGGATTTGATCTGCTAAGAAAGCAACTATTAAGAAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

53.589

100

0.541
  cinA Streptococcus pneumoniae TIGR4

51.905

100

0.527
  cinA Streptococcus pneumoniae Rx1

51.667

100

0.524
  cinA Streptococcus mitis SK321

51.667

100

0.524
  cinA Streptococcus pneumoniae R6

51.667

100

0.524
  cinA Streptococcus pneumoniae D39

51.667

100

0.524
  cinA Streptococcus mitis NCTC 12261

51.19

100

0.519
  cinA Bacillus subtilis subsp. subtilis str. 168

48.786

99.517

0.486
  cinA Streptococcus suis isolate S10

43.237

100

0.432

Multiple sequence alignment