Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LTQ54_RS04315 Genome accession   NZ_CP089203
Coordinates   921039..921338 (-) Length   99 a.a.
NCBI ID   WP_243579320.1    Uniprot ID   -
Organism   Vibrio splendidus strain 2_C04b     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 916039..926338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ54_RS04290 (LTQ54_04290) - 916479..917711 (+) 1233 WP_004736094.1 pyridoxal phosphate-dependent aminotransferase -
  LTQ54_RS04295 (LTQ54_04295) yfbR 917882..918466 (+) 585 WP_017060613.1 5'-deoxynucleotidase -
  LTQ54_RS04300 (LTQ54_04300) - 918521..919864 (+) 1344 WP_017095902.1 anti-phage deoxyguanosine triphosphatase -
  LTQ54_RS04305 (LTQ54_04305) - 919891..920490 (-) 600 WP_108112090.1 DTW domain-containing protein -
  LTQ54_RS04310 (LTQ54_04310) rrtA 920500..921048 (+) 549 WP_243579319.1 rhombosortase -
  LTQ54_RS04315 (LTQ54_04315) comEA 921039..921338 (-) 300 WP_243579320.1 ComEA family DNA-binding protein Machinery gene
  LTQ54_RS04320 (LTQ54_04320) ppiD 921600..923465 (-) 1866 WP_004736085.1 peptidylprolyl isomerase -
  LTQ54_RS04325 (LTQ54_04325) - 923685..923978 (-) 294 WP_012604504.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10741.13 Da        Isoelectric Point: 4.2220

>NTDB_id=635687 LTQ54_RS04315 WP_243579320.1 921039..921338(-) (comEA) [Vibrio splendidus strain 2_C04b]
MRTIYSTLLLSFLMALSSPAFSDSPSKAELYDGIEITVNINTATAEELSALLVGVGDKKAQEIVDYRDQNGAFTTAEDLV
SVKGIGEATVEKNRERIQL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=635687 LTQ54_RS04315 WP_243579320.1 921039..921338(-) (comEA) [Vibrio splendidus strain 2_C04b]
ATGCGCACGATATATTCAACACTACTTCTTTCATTTCTGATGGCCCTGAGCTCCCCAGCGTTTTCTGATAGCCCATCTAA
AGCTGAGCTTTACGATGGCATCGAGATTACGGTAAACATCAATACTGCGACGGCAGAAGAACTCTCAGCGCTATTAGTTG
GTGTTGGGGACAAGAAAGCCCAAGAGATCGTCGATTACAGAGATCAAAACGGTGCGTTTACGACTGCTGAGGATTTGGTG
AGTGTGAAAGGGATAGGTGAAGCTACGGTTGAAAAGAACCGTGAAAGAATTCAACTTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

53.922

100

0.556
  comEA Vibrio cholerae strain A1552

53.922

100

0.556
  comEA Vibrio campbellii strain DS40M4

54.348

92.929

0.505
  comEA Vibrio parahaemolyticus RIMD 2210633

54.945

91.919

0.505
  comEA Acinetobacter baylyi ADP1

51.22

82.828

0.424
  comE1/comEA Haemophilus influenzae Rd KW20

37.838

100

0.424
  comEA Legionella pneumophila str. Paris

36.275

100

0.374
  comEA Legionella pneumophila strain ERS1305867

36.275

100

0.374
  comEA/comE1 Glaesserella parasuis strain SC1401

61.667

60.606

0.374