Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   LQ329_RS04800 Genome accession   NZ_CP088241
Coordinates   1028106..1029200 (-) Length   364 a.a.
NCBI ID   WP_043033789.1    Uniprot ID   A0A0X3QW38
Organism   Stenotrophomonas maltophilia strain 2013-SM15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1023106..1034200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ329_RS04775 (LQ329_04775) - 1023389..1024096 (-) 708 WP_043034218.1 YitT family protein -
  LQ329_RS04780 (LQ329_04780) - 1024207..1024419 (-) 213 WP_043034209.1 DUF4287 domain-containing protein -
  LQ329_RS04785 (LQ329_04785) - 1024825..1025739 (+) 915 WP_012479096.1 IS110-like element ISStma7 family transposase -
  LQ329_RS04790 (LQ329_04790) - 1025968..1026867 (+) 900 WP_114618885.1 LysR family transcriptional regulator -
  LQ329_RS04795 (LQ329_04795) - 1026915..1027898 (-) 984 WP_114618884.1 aldo/keto reductase -
  LQ329_RS04800 (LQ329_04800) pilU 1028106..1029200 (-) 1095 WP_043033789.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LQ329_RS04805 (LQ329_04805) pilT 1029349..1030386 (-) 1038 WP_004147099.1 type IV pilus twitching motility protein PilT Machinery gene
  LQ329_RS04810 (LQ329_04810) - 1030474..1031151 (+) 678 WP_005408368.1 YggS family pyridoxal phosphate-dependent enzyme -
  LQ329_RS04815 (LQ329_04815) proC 1031170..1031991 (+) 822 WP_005408367.1 pyrroline-5-carboxylate reductase -
  LQ329_RS04820 (LQ329_04820) - 1032051..1032926 (-) 876 WP_012479333.1 LysR family transcriptional regulator -
  LQ329_RS04825 (LQ329_04825) - 1033025..1033627 (+) 603 WP_062606615.1 short chain dehydrogenase -
  LQ329_RS04830 (LQ329_04830) soxR 1033700..1034134 (-) 435 WP_005412484.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 40569.61 Da        Isoelectric Point: 6.7680

>NTDB_id=633412 LQ329_RS04800 WP_043033789.1 1028106..1029200(-) (pilU) [Stenotrophomonas maltophilia strain 2013-SM15]
MAHQRASDLFITAGMPPAMKVNGKISPITQTPLTPQQSRDLVLNVMTPAQREEFEKTHECNFAIGLSGVGRFRVSCFYQR
NQVGMVLRRIETRIPTVEELSLPPIIKTLAMTKRGIILFVGATGTGKSTSLAAMIGYRNQNSTGHIITIEDPIEFVHKHE
GCIITQREVGIDTDSWEAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAMDRIVNFFPEDRR
NQLLMDLSLNLKGVVAQQLVPSPDGRSRKVAMEILLGTPLVQDYIRDGEIHKLKEVMKDSVQLGMKTFDQSLFELYQAGE
ISYEDALRYADSQNEVRLRIKLSQGGDARTLSQGLDGVEISEIR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=633412 LQ329_RS04800 WP_043033789.1 1028106..1029200(-) (pilU) [Stenotrophomonas maltophilia strain 2013-SM15]
ATGGCGCACCAGCGCGCCTCGGACCTGTTCATCACTGCGGGCATGCCGCCGGCGATGAAGGTCAACGGCAAGATCTCGCC
GATCACGCAGACCCCGCTCACGCCGCAGCAGAGCCGCGACCTGGTCCTCAACGTGATGACCCCGGCGCAGCGCGAGGAAT
TCGAGAAGACCCACGAATGCAACTTCGCCATCGGCCTGTCCGGTGTCGGCCGCTTCCGCGTCAGCTGCTTCTACCAGCGC
AACCAGGTCGGCATGGTGCTGCGTCGCATCGAGACGCGCATTCCGACGGTGGAAGAACTGAGCCTGCCGCCGATCATTAA
GACGCTGGCGATGACCAAGCGCGGCATCATCCTGTTCGTCGGTGCCACCGGTACCGGTAAATCGACCTCGCTGGCGGCGA
TGATCGGTTACCGCAACCAGAACTCGACCGGCCACATCATCACCATCGAAGATCCGATCGAATTCGTGCACAAGCACGAG
GGCTGCATCATCACCCAGCGCGAAGTCGGCATCGATACCGACAGCTGGGAAGCCGCGCTGAAGAACACCCTGCGCCAGGC
GCCGGACGTGATCATGATTGGCGAGGTGCGTACCCGCGAAGGCATGGACCACGCCATCGCGTTCGCCGAAACCGGCCACC
TGGTGCTGTGCACCCTGCATGCCAACAACGCCAACCAGGCGATGGACCGCATCGTCAATTTCTTCCCGGAAGACCGCCGC
AACCAGCTGCTGATGGACCTGTCGCTGAATCTCAAGGGCGTGGTCGCGCAGCAGCTGGTGCCGTCGCCCGATGGCCGCTC
GCGCAAGGTGGCGATGGAGATCCTGCTGGGCACGCCGCTGGTGCAGGACTACATCCGCGACGGCGAGATCCACAAGCTGA
AGGAAGTGATGAAGGACTCGGTCCAGCTGGGCATGAAGACCTTCGACCAGAGCCTGTTCGAGCTGTACCAGGCCGGCGAG
ATCAGCTACGAGGACGCGCTGCGTTACGCCGATTCGCAGAACGAAGTGCGCCTGCGCATCAAGCTCAGCCAGGGCGGCGA
CGCACGCACGCTGTCACAGGGCCTGGATGGCGTGGAGATCTCCGAGATCCGGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(106-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X3QW38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

68.715

98.352

0.676
  pilU Acinetobacter baylyi ADP1

64.08

95.604

0.613
  pilU Vibrio cholerae strain A1552

54.467

95.33

0.519
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.899

94.78

0.407
  pilT Acinetobacter baumannii strain A118

40.303

90.659

0.365
  pilT Acinetobacter nosocomialis M2

40.303

90.659

0.365
  pilT Acinetobacter baumannii D1279779

40.303

90.659

0.365
  pilT Pseudomonas aeruginosa PAK

40.615

89.286

0.363