Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   LPC11_RS06345 Genome accession   NZ_CP088218
Coordinates   1294069..1294386 (+) Length   105 a.a.
NCBI ID   WP_023372658.1    Uniprot ID   -
Organism   Staphylococcus sp. HL28     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1289069..1299386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC11_RS06315 (LPC11_06315) - 1289860..1290063 (+) 204 WP_002451885.1 YqgQ family protein -
  LPC11_RS06320 (LPC11_06320) - 1290060..1291046 (+) 987 WP_023372667.1 ROK family glucokinase -
  LPC11_RS06325 (LPC11_06325) - 1291046..1291369 (+) 324 WP_002451887.1 MTH1187 family thiamine-binding protein -
  LPC11_RS06330 (LPC11_06330) - 1291373..1291996 (+) 624 WP_023372663.1 MBL fold metallo-hydrolase -
  LPC11_RS06335 (LPC11_06335) comGA 1292043..1293017 (+) 975 WP_023372661.1 competence type IV pilus ATPase ComGA Machinery gene
  LPC11_RS06340 (LPC11_06340) comGB 1292989..1294056 (+) 1068 WP_023372659.1 competence type IV pilus assembly protein ComGB -
  LPC11_RS06345 (LPC11_06345) comGC 1294069..1294386 (+) 318 WP_023372658.1 competence type IV pilus major pilin ComGC Machinery gene
  LPC11_RS06350 (LPC11_06350) comGD 1294364..1294804 (+) 441 WP_041613568.1 competence type IV pilus minor pilin ComGD Machinery gene
  LPC11_RS06355 (LPC11_06355) - 1295038..1295499 (+) 462 WP_231307184.1 hypothetical protein -
  LPC11_RS06360 (LPC11_06360) - 1295658..1296176 (+) 519 WP_023372652.1 shikimate kinase -
  LPC11_RS06365 (LPC11_06365) gcvT 1296349..1297440 (+) 1092 WP_023372650.1 glycine cleavage system aminomethyltransferase GcvT -
  LPC11_RS06370 (LPC11_06370) gcvPA 1297459..1298808 (+) 1350 WP_041613564.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11612.58 Da        Isoelectric Point: 8.5106

>NTDB_id=633321 LPC11_RS06345 WP_023372658.1 1294069..1294386(+) (comGC) [Staphylococcus sp. HL28]
MIKPNHSFKTKAFTLIEMLLVLLIISLLLILIIPNVAKQTANIQSTGCDAQVKMINSQIEAYSLKHNRNPNTIQDLITEG
YIKENQKSCKTGETISISNGEAIAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=633321 LPC11_RS06345 WP_023372658.1 1294069..1294386(+) (comGC) [Staphylococcus sp. HL28]
ATGATAAAACCCAATCACTCATTTAAAACTAAAGCTTTCACCTTAATCGAAATGCTTTTAGTATTATTAATAATTAGTTT
ATTACTCATTTTAATTATACCTAATGTCGCCAAACAAACGGCTAATATACAATCAACAGGCTGCGACGCACAAGTTAAAA
TGATTAATAGTCAAATTGAAGCCTATTCTTTAAAACATAATAGAAACCCAAATACGATACAGGATTTAATTACGGAAGGA
TATATTAAAGAGAATCAAAAAAGTTGTAAAACAGGTGAAACTATTTCAATTAGTAATGGCGAAGCGATTGCAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

82.474

92.381

0.762
  comGC Staphylococcus aureus N315

82.474

92.381

0.762
  comYC Streptococcus gordonii str. Challis substr. CH1

42.424

94.286

0.4
  comGC/cglC Streptococcus pneumoniae TIGR4

43.617

89.524

0.39
  comYC Streptococcus suis isolate S10

50

76.19

0.381
  comGC Bacillus subtilis subsp. subtilis str. 168

43.956

86.667

0.381
  comGC/cglC Streptococcus mitis NCTC 12261

48.718

74.286

0.362
  comGC/cglC Streptococcus mitis SK321

48.718

74.286

0.362