Detailed information NTG0633320

Bioinformatically predicted

Overview

• Name: comGA
• Type: Machinery gene
• Locus tag: LPC11_RS06335
• Genome accession: NZ_CP088218
• Coordinates: 1292043..1293017 (+)
• Length: 324 a.a.
• NCBI ID: WP_023372661.1
• Uniprot ID: -
• Organism: Staphylococcus sp. HL28
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1287043..1298017

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPC11_RS06300 (LPC11_06300)	rpmG	1287486..1287635 (+)	150	WP_002451882.1	50S ribosomal protein L33	-
LPC11_RS06305 (LPC11_06305)	-	1287865..1288419 (+)	555	WP_023372671.1	5-formyltetrahydrofolate cyclo-ligase	-
LPC11_RS06310 (LPC11_06310)	-	1288416..1289870 (+)	1455	WP_023372669.1	rhomboid family intramembrane serine protease	-
LPC11_RS06315 (LPC11_06315)	-	1289860..1290063 (+)	204	WP_002451885.1	YqgQ family protein	-
LPC11_RS06320 (LPC11_06320)	-	1290060..1291046 (+)	987	WP_023372667.1	ROK family glucokinase	-
LPC11_RS06325 (LPC11_06325)	-	1291046..1291369 (+)	324	WP_002451887.1	MTH1187 family thiamine-binding protein	-
LPC11_RS06330 (LPC11_06330)	-	1291373..1291996 (+)	624	WP_023372663.1	MBL fold metallo-hydrolase	-
LPC11_RS06335 (LPC11_06335)	comGA	1292043..1293017 (+)	975	WP_023372661.1	competence type IV pilus ATPase ComGA	Machinery gene
LPC11_RS06340 (LPC11_06340)	comGB	1292989..1294056 (+)	1068	WP_023372659.1	competence type IV pilus assembly protein ComGB	-
LPC11_RS06345 (LPC11_06345)	comGC	1294069..1294386 (+)	318	WP_023372658.1	competence type IV pilus major pilin ComGC	Machinery gene
LPC11_RS06350 (LPC11_06350)	comGD	1294364..1294804 (+)	441	WP_041613568.1	competence type IV pilus minor pilin ComGD	Machinery gene
LPC11_RS06355 (LPC11_06355)	-	1295038..1295499 (+)	462	WP_231307184.1	hypothetical protein	-
LPC11_RS06360 (LPC11_06360)	-	1295658..1296176 (+)	519	WP_023372652.1	shikimate kinase	-
LPC11_RS06365 (LPC11_06365)	gcvT	1296349..1297440 (+)	1092	WP_023372650.1	glycine cleavage system aminomethyltransferase GcvT	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37123.30 Da
• Isoelectric Point: 9.1190

>NTDB_id=633320 LPC11_RS06335 WP_023372661.1 1292043..1293017(+) (comGA) [Staphylococcus sp. HL28]
MKILFQEIINKAIAYKASDVHFIPMEHYVHIKFRVNDTLMSYETLDIGIYRKLLVFMKFQAGLDVSTQQIAQSGRYTYKL
RSVYYLRISTLPLSIGSESCVIRIVPQYFQNKKETYEFNDFKHLMNKKQGLLLFTGPTGSGKSTLMYQMVMYAQKELNLN
VISIEDPVEQILKGITQISVNTKAGITYASSFKAILRCDPDVILIGEIRDAEIAKYVFQASLSGHLVLSTLHANDCKGAL
LRLLEMGITIQELSQAINLISNQRLITTSSQQRQLVCELMFKNQINYFFEHNQTMPRSFKRLSSKLDDMTKEGIICESIA
DKYI

Nucleotide

• Length: 975 bp

>NTDB_id=633320 LPC11_RS06335 WP_023372661.1 1292043..1293017(+) (comGA) [Staphylococcus sp. HL28]
TTGAAGATATTATTTCAAGAAATCATTAATAAAGCCATAGCATATAAAGCAAGCGACGTACATTTTATCCCAATGGAACA
TTATGTTCATATAAAATTTAGAGTGAATGATACTTTAATGTCATACGAAACACTAGATATAGGGATTTATCGTAAATTAC
TCGTTTTTATGAAATTTCAAGCAGGATTGGATGTGTCGACACAGCAAATCGCTCAAAGTGGCCGTTACACATATAAATTA
AGGTCAGTTTATTACTTACGTATTTCAACGCTCCCGTTATCAATCGGTAGTGAAAGTTGTGTAATTCGTATAGTGCCTCA
ATATTTTCAAAATAAAAAGGAGACATATGAATTTAACGATTTTAAACATTTAATGAATAAGAAACAAGGATTACTGCTTT
TTACAGGACCTACTGGTTCAGGAAAAAGCACACTCATGTACCAAATGGTTATGTATGCTCAAAAAGAATTGAATCTCAAT
GTCATATCTATCGAAGACCCCGTAGAACAAATTTTAAAAGGGATTACTCAAATCTCAGTAAATACTAAGGCTGGTATTAC
TTATGCAAGTTCATTTAAAGCAATACTTCGCTGCGATCCAGATGTTATTTTGATTGGGGAAATCAGAGACGCTGAAATAG
CAAAATATGTGTTTCAAGCGAGTTTAAGTGGCCATTTAGTACTAAGTACATTACATGCTAATGATTGTAAAGGAGCATTG
CTAAGGTTATTAGAGATGGGTATTACGATTCAAGAACTATCACAAGCCATAAATTTAATATCTAATCAACGTTTAATTAC
CACATCTAGCCAACAACGCCAATTAGTTTGTGAACTTATGTTCAAAAATCAAATCAATTATTTTTTTGAACATAACCAAA
CAATGCCTAGATCATTTAAGCGATTATCTTCAAAACTAGATGATATGACTAAAGAAGGAATTATATGTGAATCAATTGCT
GATAAATATATTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (7-267)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGA	Staphylococcus aureus MW2	74.383	100	0.744
comGA	Staphylococcus aureus N315	74.383	100	0.744