Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LPC11_RS06350 Genome accession   NZ_CP088218
Coordinates   1294364..1294804 (+) Length   146 a.a.
NCBI ID   WP_041613568.1    Uniprot ID   -
Organism   Staphylococcus sp. HL28     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1289364..1299804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC11_RS06315 (LPC11_06315) - 1289860..1290063 (+) 204 WP_002451885.1 YqgQ family protein -
  LPC11_RS06320 (LPC11_06320) - 1290060..1291046 (+) 987 WP_023372667.1 ROK family glucokinase -
  LPC11_RS06325 (LPC11_06325) - 1291046..1291369 (+) 324 WP_002451887.1 MTH1187 family thiamine-binding protein -
  LPC11_RS06330 (LPC11_06330) - 1291373..1291996 (+) 624 WP_023372663.1 MBL fold metallo-hydrolase -
  LPC11_RS06335 (LPC11_06335) comGA 1292043..1293017 (+) 975 WP_023372661.1 competence type IV pilus ATPase ComGA Machinery gene
  LPC11_RS06340 (LPC11_06340) comGB 1292989..1294056 (+) 1068 WP_023372659.1 competence type IV pilus assembly protein ComGB -
  LPC11_RS06345 (LPC11_06345) comGC 1294069..1294386 (+) 318 WP_023372658.1 competence type IV pilus major pilin ComGC Machinery gene
  LPC11_RS06350 (LPC11_06350) comGD 1294364..1294804 (+) 441 WP_041613568.1 competence type IV pilus minor pilin ComGD Machinery gene
  LPC11_RS06355 (LPC11_06355) - 1295038..1295499 (+) 462 WP_231307184.1 hypothetical protein -
  LPC11_RS06360 (LPC11_06360) - 1295658..1296176 (+) 519 WP_023372652.1 shikimate kinase -
  LPC11_RS06365 (LPC11_06365) gcvT 1296349..1297440 (+) 1092 WP_023372650.1 glycine cleavage system aminomethyltransferase GcvT -
  LPC11_RS06370 (LPC11_06370) gcvPA 1297459..1298808 (+) 1350 WP_041613564.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16997.25 Da        Isoelectric Point: 10.4746

>NTDB_id=633322 LPC11_RS06350 WP_041613568.1 1294364..1294804(+) (comGD) [Staphylococcus sp. HL28]
MAKRLQIKAYNYIEMLMVLFIMSILLACTISSKNLLTLSKSNDEMNINQLITQLNYVKSKAISEKQSITLMFYNQSSNIN
VKEEHGKKYQLKIKDGKIVKITKIKLLTFDKNGNINHFGSLDIKMKDSIYKVIFHIEKGRIRYTKL

Nucleotide


Download         Length: 441 bp        

>NTDB_id=633322 LPC11_RS06350 WP_041613568.1 1294364..1294804(+) (comGD) [Staphylococcus sp. HL28]
ATGGCGAAGCGATTGCAAATTAAAGCGTATAATTACATTGAAATGTTAATGGTATTATTTATTATGTCAATATTATTGGC
GTGCACTATAAGTAGTAAAAATCTATTAACACTATCAAAGTCAAATGATGAAATGAATATCAATCAACTAATTACTCAAT
TGAATTATGTAAAATCAAAAGCAATTAGCGAAAAACAATCTATCACTTTAATGTTTTATAATCAATCCTCTAATATAAAT
GTTAAAGAAGAACACGGTAAAAAATATCAATTAAAAATAAAGGATGGAAAAATAGTAAAGATAACGAAAATCAAATTACT
TACTTTTGATAAAAATGGAAATATTAATCATTTTGGTTCTTTAGATATAAAAATGAAAGATTCAATATATAAGGTTATAT
TTCATATTGAGAAAGGACGAATAAGGTATACCAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

48.993

100

0.5
  comGD Staphylococcus aureus N315

48.993

100

0.5