Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   N6J21_RS11865 Genome accession   NZ_CP104794
Coordinates   2678312..2680045 (+) Length   577 a.a.
NCBI ID   WP_261718313.1    Uniprot ID   -
Organism   Streptomyces sp. FZ201     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2673312..2685045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6J21_RS11825 - 2673776..2674159 (-) 384 WP_093718220.1 hypothetical protein -
  N6J21_RS37815 - 2674243..2674368 (+) 126 Protein_2351 WYL domain-containing protein -
  N6J21_RS11830 - 2674611..2674853 (+) 243 WP_093718294.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  N6J21_RS11835 - 2674850..2675296 (+) 447 WP_093718219.1 PIN domain-containing protein -
  N6J21_RS11855 - 2676321..2676626 (+) 306 WP_093718218.1 hypothetical protein -
  N6J21_RS11860 - 2676695..2678134 (+) 1440 WP_261718312.1 FGGY family carbohydrate kinase -
  N6J21_RS11865 rcrP 2678312..2680045 (+) 1734 WP_261718313.1 ABC transporter ATP-binding protein Regulator
  N6J21_RS11870 rcrQ 2680045..2681973 (+) 1929 WP_093718215.1 ABC transporter ATP-binding protein Regulator
  N6J21_RS11875 - 2682120..2683385 (-) 1266 WP_093718214.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62716.89 Da        Isoelectric Point: 5.3938

>NTDB_id=633322 N6J21_RS11865 WP_261718313.1 2678312..2680045(+) (rcrP) [Streptomyces sp. FZ201]
MLIRLLRTYLRPYRKPIALLVLLQFLQTCATLYLPTLNADIIDNGVVKGDTGYILSFGALMIGISLAQVVCNIGAVYFGA
RTAAAIGRDVRSAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPVLGICVTLIVRRLRPLFRAMQERLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRRANAELTDMSLGTGNLLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTDSSVVP
PVAPVTELRRHGHLEIRGAGFRYPGAEEPVLKGIDLVALPGETTAVIGSTGSGKSTLLGLVPRLFDATEGQVLVDGEDVA
AIDQKVLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKEFVERLEGGLDAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRTALGRETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHQELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=633322 N6J21_RS11865 WP_261718313.1 2678312..2680045(+) (rcrP) [Streptomyces sp. FZ201]
GTGCTCATACGACTCCTGCGGACCTACCTCAGGCCCTACCGAAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACCCTGAACGCGGACATCATCGACAACGGCGTCGTCAAGGGCGACACCGGCTACA
TCCTGAGCTTCGGCGCCCTGATGATCGGCATCTCGCTGGCGCAGGTCGTGTGCAACATCGGGGCCGTGTACTTCGGTGCC
CGGACCGCCGCGGCGATCGGCCGGGACGTCCGGAGCGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCGCGTGAGGTGGG
CCACTTCGGCGCGCCCTCGCTGATCACCCGCACCACCAATGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CCCTGATGGTCTCGGCACCGATCATGTGCGTCGGCGGCATCGTGCTGGCCCTCGGCCTGGACGTGCCGCTGTCGGCGGTG
CTGGTCGCGGTGGTGCCGGTGCTGGGCATCTGCGTGACCTTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGTGCCATGCA
GGAGCGGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGCGACG
AGTACGAGCAGCAGCGCTTCCGCAGGGCCAACGCCGAGCTGACCGACATGTCGCTGGGCACCGGGAACCTGCTCGCGCTG
ATGTTCCCCATCGTGATGACGGTGGTGAACCTGTCCTCGATCGCGGTGGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGATCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTCGACACCGACTCCAGCGTGGTGCCC
CCGGTGGCGCCGGTCACCGAGCTGCGCCGGCACGGGCATCTGGAGATCCGCGGCGCCGGTTTCCGCTATCCGGGCGCCGA
GGAGCCGGTACTCAAGGGCATCGACCTGGTGGCGCTGCCCGGCGAGACCACCGCCGTGATCGGCTCGACCGGCAGCGGCA
AATCCACCCTGCTCGGGCTGGTCCCCCGTCTCTTCGACGCGACCGAGGGCCAGGTCCTGGTGGACGGCGAGGACGTGGCC
GCCATCGACCAGAAGGTGCTCGCGAAGACGGTCGGCCTGGTTCCGCAGAAGCCGTACCTGTTCGCCGGGACCGTGGCGAC
CAACCTGCGCTACGGCAATCCCGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAAGTCGCGCAGGCCAAGGAGTTCG
TGGAGCGCCTGGAGGGCGGGCTCGACGCACCGATCTCGCAGGGCGGCACCAACGTCTCCGGCGGCCAGCGGCAGCGCCTG
GCCATCGCCCGCACCCTCGTGCAGCGTCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCCGCCCTGCGCACCGCGCTGGGCCGCGAGACGGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCGGACCGGATCGTCGTGCTCGACGAGGGACGCGTCGTCGGCACCGGCCGGCACCAGGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.034

100

0.404