Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LRM40_RS14210 Genome accession   NZ_CP088081
Coordinates   3072115..3073335 (+) Length   406 a.a.
NCBI ID   WP_151124674.1    Uniprot ID   A0A643FBI8
Organism   Ideonella dechloratans strain CCUG 30977     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3067115..3078335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRM40_RS14190 (LRM40_14190) - 3067365..3067880 (-) 516 WP_151124678.1 hypothetical protein -
  LRM40_RS14195 (LRM40_14195) - 3068107..3068430 (+) 324 WP_151124677.1 helix-turn-helix domain-containing protein -
  LRM40_RS14200 (LRM40_14200) - 3068441..3069799 (+) 1359 WP_151124676.1 HipA domain-containing protein -
  LRM40_RS14205 (LRM40_14205) pilF 3070329..3072050 (+) 1722 WP_151124675.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LRM40_RS14210 (LRM40_14210) pilC 3072115..3073335 (+) 1221 WP_151124674.1 type II secretion system F family protein Machinery gene
  LRM40_RS14215 (LRM40_14215) - 3073339..3074268 (+) 930 WP_151124673.1 A24 family peptidase -
  LRM40_RS14220 (LRM40_14220) coaE 3074265..3074894 (+) 630 WP_151124672.1 dephospho-CoA kinase -
  LRM40_RS14225 (LRM40_14225) zapD 3074935..3075690 (+) 756 WP_151124671.1 cell division protein ZapD -
  LRM40_RS14230 (LRM40_14230) - 3075659..3075901 (+) 243 WP_151124670.1 DNA gyrase inhibitor YacG -
  LRM40_RS14235 (LRM40_14235) - 3075898..3076551 (+) 654 WP_151124669.1 hypothetical protein -
  LRM40_RS14240 (LRM40_14240) groES 3076747..3077037 (+) 291 WP_022980493.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44346.34 Da        Isoelectric Point: 10.0428

>NTDB_id=632606 LRM40_RS14210 WP_151124674.1 3072115..3073335(+) (pilC) [Ideonella dechloratans strain CCUG 30977]
MATAAAAKNVKDFTYEWEGKDRNGKIVRGEMRAGGEAAVSASLRRQGVMVSKVKKRRTSGGKSIKPKDIAVFTRQLATMM
RAGVPLLQAFDIVARGSVNARLTRLLLDIRADVETGTALSSAFRRHPQYFDALYCNLVEAGEAGGILEQLLARLALYQEK
SLALKQKVKSAMIYPVSVLVVAFVVVTVIMIFVIPAFKQVFTSFGADLPAPTLLVMAMSDFFVKYWWAIFGTIFGGGYMF
FRTWKRSEKMQMVMDRLLLRMPIFGDLIMKSVVARWTRTLSTLFAAGVPLVEALDSVGGTAGNAVYAKATEQIQRDVAAG
TALTPSMTTTGVFPNMVLQMAAIGEESGALDDMLSRAADFYEEEVDEMVKGLSTLMEPLIIVILGVLIGGIVVSMYLPIF
KLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=632606 LRM40_RS14210 WP_151124674.1 3072115..3073335(+) (pilC) [Ideonella dechloratans strain CCUG 30977]
ATGGCTACTGCAGCGGCAGCGAAGAACGTCAAGGACTTCACCTACGAATGGGAAGGCAAGGACCGCAACGGCAAGATCGT
GCGCGGCGAAATGCGTGCCGGGGGCGAGGCCGCGGTCAGCGCCAGCCTGCGTCGCCAAGGGGTGATGGTTTCCAAGGTCA
AGAAGCGCCGGACCTCGGGCGGCAAGTCGATCAAGCCCAAGGACATCGCGGTCTTCACCCGTCAGCTGGCCACCATGATG
CGGGCCGGCGTGCCCCTGCTGCAGGCCTTTGACATCGTCGCCCGCGGCAGCGTCAACGCCCGGCTGACCCGCCTGCTGCT
CGACATCCGGGCCGACGTGGAGACCGGCACGGCGCTGTCCTCGGCCTTCCGCCGGCACCCTCAGTACTTCGATGCGCTGT
ACTGCAACCTGGTGGAAGCCGGCGAGGCCGGCGGTATCCTGGAGCAGCTGCTGGCCCGCCTGGCCCTGTACCAGGAGAAG
AGCCTGGCGCTCAAGCAGAAGGTCAAGTCGGCGATGATCTATCCGGTGTCGGTGCTGGTCGTGGCCTTCGTTGTCGTGAC
GGTGATCATGATCTTCGTGATCCCGGCCTTCAAGCAGGTCTTCACCAGCTTCGGCGCCGACCTGCCGGCCCCGACCCTGC
TCGTCATGGCCATGAGCGACTTCTTCGTGAAGTACTGGTGGGCCATCTTCGGCACGATTTTCGGGGGCGGCTACATGTTC
TTCCGCACATGGAAGCGCTCGGAGAAGATGCAGATGGTGATGGACCGGCTGCTGTTGCGCATGCCGATCTTCGGCGATCT
GATCATGAAGTCGGTGGTGGCCCGCTGGACCCGCACCCTCTCGACACTGTTCGCCGCGGGCGTGCCGCTGGTGGAAGCCC
TGGACTCGGTGGGTGGCACCGCCGGCAACGCCGTCTATGCCAAGGCCACGGAACAGATCCAGCGCGACGTCGCGGCCGGT
ACCGCGCTGACCCCCTCGATGACCACCACCGGCGTGTTCCCGAACATGGTGCTGCAGATGGCCGCCATCGGTGAAGAATC
GGGCGCCCTGGACGACATGCTCTCCCGCGCCGCCGACTTCTACGAGGAGGAGGTGGACGAGATGGTCAAGGGCCTGTCCA
CCCTGATGGAGCCCCTGATCATCGTGATCCTGGGCGTGCTCATCGGCGGCATCGTGGTGTCGATGTACCTGCCGATCTTC
AAGCTGGGTCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A643FBI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.228

99.507

0.52
  pilG Neisseria meningitidis 44/76-A

52.75

98.522

0.52
  pilG Neisseria gonorrhoeae MS11

52.75

98.522

0.52
  pilC Acinetobacter baumannii D1279779

49.246

98.03

0.483
  pilC Acinetobacter baylyi ADP1

49.37

97.783

0.483
  pilC Legionella pneumophila strain ERS1305867

48.995

98.03

0.48
  pilC Vibrio cholerae strain A1552

42.607

98.276

0.419
  pilC Vibrio campbellii strain DS40M4

42.04

99.015

0.416
  pilC Thermus thermophilus HB27

39.952

100

0.411