Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   LOH54_RS11460 Genome accession   NZ_CP087998
Coordinates   2252162..2252404 (-) Length   80 a.a.
NCBI ID   WP_231021243.1    Uniprot ID   -
Organism   Sulfurimonas sp. HSL-3221     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2247162..2257404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOH54_RS11425 (LOH54_11425) - 2247183..2247353 (+) 171 WP_231019210.1 hypothetical protein -
  LOH54_RS11430 (LOH54_11430) - 2247364..2247843 (-) 480 WP_231019211.1 hypothetical protein -
  LOH54_RS11435 (LOH54_11435) - 2247840..2248424 (-) 585 WP_231019212.1 NlpC/P60 family protein -
  LOH54_RS11440 (LOH54_11440) - 2248441..2249457 (-) 1017 WP_231019213.1 aldo/keto reductase -
  LOH54_RS11445 (LOH54_11445) - 2249493..2250383 (-) 891 WP_231019214.1 DUF234 domain-containing protein -
  LOH54_RS11450 (LOH54_11450) - 2250411..2250596 (-) 186 WP_231019215.1 hypothetical protein -
  LOH54_RS11455 (LOH54_11455) aguB 2250670..2251521 (-) 852 WP_231019216.1 N-carbamoylputrescine amidase -
  LOH54_RS11460 (LOH54_11460) Cj0011c 2252162..2252404 (-) 243 WP_231021243.1 helix-hairpin-helix domain-containing protein Machinery gene
  LOH54_RS11465 (LOH54_11465) - 2252579..2253040 (+) 462 WP_231019217.1 hypothetical protein -
  LOH54_RS11470 (LOH54_11470) - 2253130..2253393 (-) 264 WP_231019218.1 sugar transferase -
  LOH54_RS11475 (LOH54_11475) - 2253366..2254415 (-) 1050 WP_231019219.1 sugar transferase -
  LOH54_RS11480 (LOH54_11480) - 2254549..2255910 (-) 1362 WP_231019220.1 phosphomannomutase/phosphoglucomutase -
  LOH54_RS11485 (LOH54_11485) - 2255921..2257300 (-) 1380 WP_231019221.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 80 a.a.        Molecular weight: 8643.14 Da        Isoelectric Point: 8.5851

>NTDB_id=632213 LOH54_RS11460 WP_231021243.1 2252162..2252404(-) (Cj0011c) [Sulfurimonas sp. HSL-3221]
MKKTAAVLAALVISIPLFAGVNLNTATAEELSSLKGIGPATAAKIIEYRKEHRFNSIEDIMNVKGVGEKTFLKIKDDLEV

Nucleotide


Download         Length: 243 bp        

>NTDB_id=632213 LOH54_RS11460 WP_231021243.1 2252162..2252404(-) (Cj0011c) [Sulfurimonas sp. HSL-3221]
ATGAAGAAAACCGCAGCGGTGCTTGCCGCGCTGGTGATCAGCATACCTCTGTTCGCGGGGGTCAACCTCAACACGGCGAC
GGCGGAGGAGTTGTCCAGTCTCAAGGGGATCGGCCCGGCGACGGCGGCGAAGATCATTGAGTACCGCAAAGAGCACCGCT
TTAACAGCATCGAGGATATCATGAACGTCAAGGGGGTGGGCGAAAAAACCTTCCTGAAGATCAAGGATGATCTCGAGGTC
TAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.5

100

0.525
  comEA Bacillus subtilis subsp. subtilis str. 168

55.738

76.25

0.425
  comE Neisseria gonorrhoeae MS11

40.741

100

0.413
  comE Neisseria gonorrhoeae MS11

40.741

100

0.413
  comE Neisseria gonorrhoeae MS11

40.741

100

0.413
  comE Neisseria gonorrhoeae MS11

40.741

100

0.413
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.632

71.25

0.375
  comEA Vibrio parahaemolyticus RIMD 2210633

51.724

72.5

0.375
  comEA Staphylococcus aureus MW2

51.786

70

0.363
  comEA Staphylococcus aureus N315

51.786

70

0.363
  comEA Streptococcus thermophilus LMD-9

47.541

76.25

0.363