Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | LPH50_RS05605 | Genome accession | NZ_CP087689 |
| Coordinates | 1379291..1380493 (-) | Length | 400 a.a. |
| NCBI ID | WP_114867231.1 | Uniprot ID | - |
| Organism | Xylella taiwanensis strain PLS415 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1374291..1385493
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPH50_RS05585 (LPH50_05585) | - | 1375468..1376145 (+) | 678 | WP_038269661.1 | response regulator transcription factor | - |
| LPH50_RS05590 (LPH50_05590) | - | 1376138..1377475 (+) | 1338 | WP_038269659.1 | HAMP domain-containing sensor histidine kinase | - |
| LPH50_RS05595 (LPH50_05595) | coaE | 1377774..1378409 (-) | 636 | WP_038269657.1 | dephospho-CoA kinase | - |
| LPH50_RS05600 (LPH50_05600) | - | 1378421..1379284 (-) | 864 | WP_038269655.1 | A24 family peptidase | - |
| LPH50_RS05605 (LPH50_05605) | pilC | 1379291..1380493 (-) | 1203 | WP_114867231.1 | type II secretion system F family protein | Machinery gene |
| LPH50_RS05610 (LPH50_05610) | - | 1380934..1381389 (+) | 456 | WP_038269653.1 | pilin | - |
| LPH50_RS05615 (LPH50_05615) | - | 1383486..1383692 (-) | 207 | WP_152536555.1 | hypothetical protein | - |
| LPH50_RS05620 (LPH50_05620) | - | 1384089..1384631 (+) | 543 | WP_038269649.1 | pilin | - |
| LPH50_RS05625 (LPH50_05625) | - | 1384835..1385311 (+) | 477 | WP_038269647.1 | pilin | - |
Sequence
Protein
Download Length: 400 a.a. Molecular weight: 44202.33 Da Isoelectric Point: 10.2792
>NTDB_id=630916 LPH50_RS05605 WP_114867231.1 1379291..1380493(-) (pilC) [Xylella taiwanensis strain PLS415]
MTSFLWEGTDKRGIKIKGEQTARTASLLRAELRRQGITPHVVRPKPKPLFGQAGRRITAKDIAFFSRQMATMMKAGVPIV
GALDILVNGQKNPRMRTMVNQIKNDIEGGSSLYEAISKHPVHFDELYRNLVRAGERAGVLETVLDTIASYKENIEALKSK
IRKALFYPAAVVSVALIVSSVLLVYVVPQFEDVFKGFGAELPAFTQMIVNISKFMQQWWWVMLVLLIVVIGGAIFTYKRS
VYMQHMLDRLVLRFPIIGRIMHNSALARFSRTTAVTFRAGVPLVEALGIVAGATGNKVYADAVLRMRDDVSVGYAINMAM
RQVGLFPHMVVQMTAIGEEAGALDAMLFKVAEYYEQEVGNAVDGLSSLLEPLIMVFIGVIVGGMVIAMYLPIFKLASVVG
MTSFLWEGTDKRGIKIKGEQTARTASLLRAELRRQGITPHVVRPKPKPLFGQAGRRITAKDIAFFSRQMATMMKAGVPIV
GALDILVNGQKNPRMRTMVNQIKNDIEGGSSLYEAISKHPVHFDELYRNLVRAGERAGVLETVLDTIASYKENIEALKSK
IRKALFYPAAVVSVALIVSSVLLVYVVPQFEDVFKGFGAELPAFTQMIVNISKFMQQWWWVMLVLLIVVIGGAIFTYKRS
VYMQHMLDRLVLRFPIIGRIMHNSALARFSRTTAVTFRAGVPLVEALGIVAGATGNKVYADAVLRMRDDVSVGYAINMAM
RQVGLFPHMVVQMTAIGEEAGALDAMLFKVAEYYEQEVGNAVDGLSSLLEPLIMVFIGVIVGGMVIAMYLPIFKLASVVG
Nucleotide
Download Length: 1203 bp
>NTDB_id=630916 LPH50_RS05605 WP_114867231.1 1379291..1380493(-) (pilC) [Xylella taiwanensis strain PLS415]
TTGACCTCCTTCCTTTGGGAAGGAACTGACAAGCGTGGTATCAAGATCAAGGGAGAACAGACGGCACGTACGGCGAGTCT
GTTGCGTGCTGAGCTACGTCGCCAAGGCATCACCCCTCATGTGGTCAGACCCAAGCCCAAGCCGCTGTTTGGTCAAGCAG
GCAGGCGGATTACTGCAAAGGACATTGCCTTTTTTAGTCGCCAGATGGCAACGATGATGAAAGCTGGGGTCCCTATTGTC
GGAGCGTTGGATATCCTGGTGAACGGCCAGAAGAATCCGCGTATGCGTACGATGGTCAACCAAATTAAAAATGATATTGA
AGGTGGTTCCTCACTGTACGAGGCAATCAGCAAGCATCCGGTGCATTTCGATGAGCTGTATCGCAATCTGGTCAGGGCGG
GTGAGCGTGCGGGTGTGCTGGAGACGGTGCTCGATACGATTGCCAGTTATAAGGAGAACATCGAGGCTCTGAAGAGTAAA
ATCCGTAAGGCGTTGTTCTATCCTGCTGCTGTCGTCTCGGTTGCTCTCATTGTCAGTTCGGTCTTGTTGGTATATGTGGT
GCCGCAGTTTGAGGATGTGTTCAAAGGATTCGGAGCGGAGTTGCCCGCATTCACTCAGATGATCGTCAATATTTCCAAAT
TCATGCAGCAGTGGTGGTGGGTCATGCTGGTGTTGCTGATTGTTGTTATCGGTGGTGCCATCTTTACTTACAAGCGCTCG
GTGTACATGCAGCACATGCTAGATAGGTTGGTGTTGCGGTTCCCAATAATCGGGAGGATCATGCATAACAGCGCACTTGC
TCGTTTCTCGCGAACGACAGCCGTTACTTTCCGTGCAGGTGTGCCACTGGTAGAGGCATTGGGTATTGTTGCTGGTGCAA
CCGGCAATAAGGTCTACGCGGATGCCGTGCTACGGATGCGTGATGATGTCTCTGTTGGCTATGCGATAAATATGGCAATG
AGGCAAGTTGGTTTATTCCCCCATATGGTGGTGCAGATGACTGCCATTGGTGAGGAAGCAGGCGCTCTGGATGCAATGCT
ATTTAAAGTTGCCGAATACTACGAACAGGAAGTCGGTAACGCGGTGGACGGGCTCAGCAGCTTGTTGGAACCGCTGATCA
TGGTTTTTATTGGTGTTATCGTCGGCGGCATGGTCATTGCTATGTATTTGCCGATCTTCAAGCTTGCTTCTGTAGTTGGA
TAA
TTGACCTCCTTCCTTTGGGAAGGAACTGACAAGCGTGGTATCAAGATCAAGGGAGAACAGACGGCACGTACGGCGAGTCT
GTTGCGTGCTGAGCTACGTCGCCAAGGCATCACCCCTCATGTGGTCAGACCCAAGCCCAAGCCGCTGTTTGGTCAAGCAG
GCAGGCGGATTACTGCAAAGGACATTGCCTTTTTTAGTCGCCAGATGGCAACGATGATGAAAGCTGGGGTCCCTATTGTC
GGAGCGTTGGATATCCTGGTGAACGGCCAGAAGAATCCGCGTATGCGTACGATGGTCAACCAAATTAAAAATGATATTGA
AGGTGGTTCCTCACTGTACGAGGCAATCAGCAAGCATCCGGTGCATTTCGATGAGCTGTATCGCAATCTGGTCAGGGCGG
GTGAGCGTGCGGGTGTGCTGGAGACGGTGCTCGATACGATTGCCAGTTATAAGGAGAACATCGAGGCTCTGAAGAGTAAA
ATCCGTAAGGCGTTGTTCTATCCTGCTGCTGTCGTCTCGGTTGCTCTCATTGTCAGTTCGGTCTTGTTGGTATATGTGGT
GCCGCAGTTTGAGGATGTGTTCAAAGGATTCGGAGCGGAGTTGCCCGCATTCACTCAGATGATCGTCAATATTTCCAAAT
TCATGCAGCAGTGGTGGTGGGTCATGCTGGTGTTGCTGATTGTTGTTATCGGTGGTGCCATCTTTACTTACAAGCGCTCG
GTGTACATGCAGCACATGCTAGATAGGTTGGTGTTGCGGTTCCCAATAATCGGGAGGATCATGCATAACAGCGCACTTGC
TCGTTTCTCGCGAACGACAGCCGTTACTTTCCGTGCAGGTGTGCCACTGGTAGAGGCATTGGGTATTGTTGCTGGTGCAA
CCGGCAATAAGGTCTACGCGGATGCCGTGCTACGGATGCGTGATGATGTCTCTGTTGGCTATGCGATAAATATGGCAATG
AGGCAAGTTGGTTTATTCCCCCATATGGTGGTGCAGATGACTGCCATTGGTGAGGAAGCAGGCGCTCTGGATGCAATGCT
ATTTAAAGTTGCCGAATACTACGAACAGGAAGTCGGTAACGCGGTGGACGGGCTCAGCAGCTTGTTGGAACCGCTGATCA
TGGTTTTTATTGGTGTTATCGTCGGCGGCATGGTCATTGCTATGTATTTGCCGATCTTCAAGCTTGCTTCTGTAGTTGGA
TAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
53.5 |
100 |
0.535 |
| pilC | Acinetobacter baylyi ADP1 |
52.25 |
100 |
0.523 |
| pilC | Acinetobacter baumannii D1279779 |
51.75 |
100 |
0.518 |
| pilC | Legionella pneumophila strain ERS1305867 |
50.877 |
99.75 |
0.507 |
| pilG | Neisseria gonorrhoeae MS11 |
42.965 |
99.5 |
0.428 |
| pilG | Neisseria meningitidis 44/76-A |
42.537 |
100 |
0.427 |
| pilC | Vibrio campbellii strain DS40M4 |
41.646 |
100 |
0.418 |
| pilC | Vibrio cholerae strain A1552 |
41 |
100 |
0.41 |
| pilC | Thermus thermophilus HB27 |
39.12 |
100 |
0.4 |