Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IUZ65_RS16420 Genome accession   NZ_CP087590
Coordinates   3592032..3593138 (-) Length   368 a.a.
NCBI ID   WP_195704709.1    Uniprot ID   -
Organism   Vibrio sp. VB16     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3587032..3598138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUZ65_RS16390 (IUZ65_016390) hemF 3587599..3588507 (-) 909 WP_195704703.1 oxygen-dependent coproporphyrinogen oxidase -
  IUZ65_RS16395 (IUZ65_016395) - 3588573..3589130 (-) 558 WP_195704704.1 L-threonylcarbamoyladenylate synthase -
  IUZ65_RS16400 (IUZ65_016400) purE 3589301..3589786 (+) 486 WP_195704705.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  IUZ65_RS16405 (IUZ65_016405) - 3589792..3590934 (+) 1143 WP_195704706.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  IUZ65_RS16410 (IUZ65_016410) - 3590963..3591535 (-) 573 WP_195704707.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  IUZ65_RS16415 (IUZ65_016415) - 3591556..3592029 (-) 474 WP_195704708.1 DUF494 family protein -
  IUZ65_RS16420 (IUZ65_016420) dprA 3592032..3593138 (-) 1107 WP_195704709.1 DNA-processing protein DprA Machinery gene
  IUZ65_RS16425 (IUZ65_016425) def 3593365..3593877 (+) 513 WP_195704710.1 peptide deformylase -
  IUZ65_RS16430 (IUZ65_016430) fmt 3593891..3594838 (+) 948 WP_195704711.1 methionyl-tRNA formyltransferase -
  IUZ65_RS16435 (IUZ65_016435) rsmB 3594947..3596227 (+) 1281 WP_195704712.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  IUZ65_RS16440 (IUZ65_016440) trkA 3596287..3597663 (+) 1377 WP_195704713.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 40115.82 Da        Isoelectric Point: 6.6987

>NTDB_id=630242 IUZ65_RS16420 WP_195704709.1 3592032..3593138(-) (dprA) [Vibrio sp. VB16]
MCEKMLSAWLTLSFTPYIGSRNFSKLVAISSPENIVSYSRNELEYLGLKPQQIDYIKRYAAKDVDYCLSWQQSAASHRIM
TLIDNDYPELLKQIGLPPPILFIKGDVDCLSDPQIAIVGSRNASVDGLQNAKAFSGDLARKGITITSGLALGIDGHAHDG
ALKAGGKTIAVLGSGLESIYPAKHRDLSKRIIENGALVSEFRPNGLPKPENFPRRNRIISGLSLGVLIVEAAQKSGSLIT
ARYANEQGREVFALPGSIHNPHAKGGNSLIKEGASLVQSSSDMLKEIDSLLNWSINNQRELFSTEDEKEQLPFSVLLANV
GEEEAVSVDILAQRTHIPVNEIMMQLLELELQGHVAAVSGGYIRTRRG

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=630242 IUZ65_RS16420 WP_195704709.1 3592032..3593138(-) (dprA) [Vibrio sp. VB16]
ATGTGTGAAAAAATGCTTTCGGCATGGTTAACTCTTAGTTTTACTCCCTATATAGGGAGTCGTAATTTCAGTAAGTTAGT
TGCTATTTCTTCTCCGGAGAATATCGTCAGCTATTCTCGAAATGAATTAGAATACTTAGGGTTAAAACCACAACAGATCG
ATTACATCAAACGATATGCGGCGAAAGATGTGGATTATTGCCTTTCATGGCAACAATCTGCTGCTTCTCATAGAATTATG
ACTTTAATCGATAATGATTATCCGGAACTCCTGAAACAAATTGGGCTCCCACCTCCGATCCTGTTTATAAAAGGGGACGT
TGATTGTCTGTCTGATCCACAAATTGCCATCGTTGGAAGTCGAAATGCGAGCGTTGATGGTTTGCAAAATGCGAAAGCTT
TTTCTGGAGACCTGGCTCGTAAAGGAATAACTATTACTAGTGGATTAGCATTGGGTATTGATGGCCATGCGCATGACGGT
GCTCTAAAGGCAGGAGGAAAAACAATTGCAGTGCTTGGTTCAGGTTTAGAGAGTATTTATCCTGCCAAGCATCGTGACCT
TTCGAAAAGAATTATAGAAAATGGTGCTTTGGTATCGGAGTTTAGGCCTAATGGGTTACCCAAACCCGAAAATTTCCCTC
GTAGAAATAGAATCATTAGTGGACTGTCATTAGGTGTACTTATTGTCGAGGCTGCGCAAAAGAGTGGTTCGTTGATCACG
GCAAGGTATGCCAATGAACAGGGTAGAGAAGTATTTGCGCTACCAGGTTCTATTCATAATCCGCACGCCAAGGGGGGGAA
CTCGCTAATAAAAGAGGGGGCAAGTCTTGTTCAGTCCTCAAGTGATATGCTGAAAGAGATAGACAGTTTGTTGAACTGGT
CGATTAACAATCAAAGAGAGCTATTTTCTACTGAAGATGAAAAAGAGCAATTGCCATTTTCGGTACTCTTGGCTAACGTA
GGGGAAGAAGAAGCTGTATCGGTTGATATTTTGGCACAGAGGACCCATATCCCAGTGAATGAAATTATGATGCAGCTTCT
GGAGCTAGAACTTCAGGGGCATGTTGCAGCTGTATCTGGCGGTTATATTCGAACGAGGAGGGGTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)

DprA winged helix domain (DprA_WH)

(316-361)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

63.912

98.641

0.63
  dprA Vibrio cholerae strain A1552

55.914

100

0.565
  dprA Glaesserella parasuis strain SC1401

45.187

100

0.459
  dprA Legionella pneumophila strain ERS1305867

45.429

98.098

0.446
  dprA Neisseria meningitidis MC58

40.955

100

0.443
  dprA Neisseria meningitidis strain C311

40.955

100

0.443
  dprA Neisseria gonorrhoeae strain FA1090

40.05

100

0.432
  dprA Neisseria gonorrhoeae MS11

40.05

100

0.432
  dprA Haemophilus influenzae Rd KW20

48.464

79.62

0.386