Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   N596_RS00230 Genome accession   NC_022584
Coordinates   30959..31618 (-) Length   219 a.a.
NCBI ID   WP_023026445.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 25959..36618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS00210 (N596_00210) - 27134..27712 (+) 579 WP_023026442.1 YutD family protein -
  N596_RS00215 (N596_00215) rlmN 27731..28819 (+) 1089 WP_023022438.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  N596_RS00220 (N596_00220) - 28797..29330 (+) 534 WP_023026443.1 VanZ family protein -
  N596_RS00225 (N596_00225) trpB 29765..30952 (+) 1188 WP_023026444.1 tryptophan synthase subunit beta -
  N596_RS00230 (N596_00230) cclA/cilC 30959..31618 (-) 660 WP_023026445.1 A24 family peptidase Machinery gene
  N596_RS00235 (N596_00235) - 31772..32299 (+) 528 WP_006596795.1 DNA starvation/stationary phase protection protein -
  N596_RS00240 (N596_00240) - 32423..32641 (+) 219 WP_006596794.1 YqgQ family protein -
  N596_RS00245 (N596_00245) - 32680..33024 (+) 345 WP_042361384.1 rhodanese-like domain-containing protein -
  N596_RS00250 (N596_00250) - 33100..33333 (+) 234 WP_023022451.1 hypothetical protein -
  N596_RS00255 (N596_00255) - 33526..34251 (-) 726 WP_023022453.1 16S rRNA pseudouridine(516) synthase -
  N596_RS00260 (N596_00260) typA 34490..36337 (+) 1848 WP_023022455.1 translational GTPase TypA -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24906.04 Da        Isoelectric Point: 8.0267

>NTDB_id=62935 N596_RS00230 WP_023026445.1 30959..31618(-) (cclA/cilC) [Streptococcus ilei]
MINFYFFTVGSCIASFLGLVIDRFPESSIIRPRSHCDHCQQTLRPLDLIPILSQVLFRFRCRYCQSPLPYWYALFEVWSG
LLFLLCYQGLLPISHLFVLLGSCVLAIYDLRSMEYPLLLWLVLHALCLFFTSPTLLMGVFLFLGVLSAVYSIGIGAGDFL
LLATFSLTLSAVQVLLVMQGASLIGLLVFLLKKEKDRIPFVPCLFLSYQALLFFTIFSR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=62935 N596_RS00230 WP_023026445.1 30959..31618(-) (cclA/cilC) [Streptococcus ilei]
ATGATCAACTTTTATTTTTTTACAGTCGGTTCCTGTATTGCCTCCTTTTTAGGTCTCGTCATCGACCGCTTTCCAGAAAG
CTCCATCATTCGTCCAAGAAGCCATTGCGACCATTGCCAACAGACCTTGAGACCTCTGGACCTGATTCCTATCCTCTCAC
AAGTCCTCTTTCGATTCCGTTGTCGCTACTGCCAGAGTCCGCTTCCTTATTGGTATGCTCTCTTTGAAGTCTGGTCTGGC
CTCCTTTTTTTGCTGTGCTATCAGGGCCTTCTTCCTATTTCTCATCTTTTCGTTCTACTTGGTAGTTGTGTTTTGGCCAT
CTATGATTTGCGCTCCATGGAGTATCCACTCCTCCTCTGGCTGGTGCTCCACGCTCTTTGCCTGTTTTTCACCAGCCCTA
CCCTCTTGATGGGAGTCTTTCTCTTCTTAGGAGTCCTGTCAGCTGTTTACTCCATCGGCATTGGCGCAGGGGACTTTCTC
TTACTGGCTACTTTTTCTTTGACCCTCTCAGCTGTCCAAGTCCTCCTCGTCATGCAAGGGGCTTCTCTCATTGGTCTCCT
TGTCTTCCTCTTAAAAAAAGAAAAAGACCGGATTCCTTTTGTTCCCTGTCTTTTTCTGAGTTATCAGGCTTTACTGTTTT
TTACAATTTTTAGCAGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae Rx1

53.991

97.26

0.525
  cclA/cilC Streptococcus pneumoniae D39

53.991

97.26

0.525
  cclA/cilC Streptococcus pneumoniae R6

53.991

97.26

0.525
  cclA/cilC Streptococcus mitis SK321

53.521

97.26

0.521
  cclA/cilC Streptococcus mitis NCTC 12261

53.052

97.26

0.516
  cclA/cilC Streptococcus pneumoniae TIGR4

54.106

94.521

0.511

Multiple sequence alignment