NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	N4P55_RS17740	Genome accession	NZ_CP104408
Coordinates	3914310..3914945 (-)	Length	211 a.a.
NCBI ID	WP_003238276.1	Uniprot ID	A0A0R2ZNS5
Organism	Pseudomonas fluorescens strain Ant01
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3909310..3919945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N4P55_RS17725 (N4P55_17740)	-	3909905..3910177 (-)	273	WP_003174819.1	HU family DNA-binding protein	-
N4P55_RS17730 (N4P55_17745)	lon	3910326..3912722 (-)	2397	WP_064453005.1	endopeptidase La	-
N4P55_RS17735 (N4P55_17750)	clpX	3912914..3914197 (-)	1284	WP_017136464.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
N4P55_RS17740 (N4P55_17755)	clpP	3914310..3914945 (-)	636	WP_003238276.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
N4P55_RS17745 (N4P55_17760)	tig	3915037..3916347 (-)	1311	WP_064453006.1	trigger factor	-
N4P55_RS17750 (N4P55_17765)	-	3916594..3916911 (+)	318	WP_156526289.1	hypothetical protein	-
N4P55_RS17775 (N4P55_17790)	folD	3917669..3918523 (+)	855	WP_064453007.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-
N4P55_RS17780 (N4P55_17795)	pbpG	3918731..3919654 (+)	924	WP_064453008.1	D-alanyl-D-alanine endopeptidase	-

Sequence

Protein

Download Length: 211 a.a. Molecular weight: 23389.79 Da Isoelectric Point: 5.6333

                                >NTDB_id=629333 N4P55_RS17740 WP_003238276.1 3914310..3914945(-) (clpP) [Pseudomonas fluorescens strain Ant01]

MFRNSYIQQNSDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYI

NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAEGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEIL

FIRERLNTLMAKHSGHTLEEIERDTNRDNFMSAEAARAYGLIDAVIEKRPA

Nucleotide

Download Length: 636 bp

                                >NTDB_id=629333 N4P55_RS17740 WP_003238276.1 3914310..3914945(-) (clpP) [Pseudomonas fluorescens strain Ant01]

ATGTTCCGTAATTCCTATATTCAGCAGAACTCTGATATCCAGGCCGCTGGCGGCCTGGTCCCGATGGTTGTCGAGCAATC

TGCTCGTGGCGAACGCGCCTATGACATCTACTCGCGCCTGCTCAAGGAACGAGTGATCTTTCTGGTCGGCCCTGTAGAGG

ACTACATGGCCAACCTGATCTGCGCGCAGCTGCTGTTCCTTGAAGCGGAAAACCCGGACAAGGACATCCATCTTTACATT

AACTCCCCGGGCGGCTCGGTGACGGCGGGTATGTCGATCTACGACACCATGCAGTTCATCAAGCCAAACGTGTCGACCAC

GTGCATCGGCCAGGCCTGCAGCATGGGCGCGTTCCTGCTGACCGCAGGTGCCGAGGGCAAGCGCTTCTGCCTGCCGAACT

CGCGCGTGATGATTCACCAGCCATTGGGTGGTTTCCAGGGCCAGGCGTCGGACATCGAAATTCACGCCAAGGAAATCCTG

TTTATTCGTGAGCGCCTCAATACATTGATGGCCAAGCACAGCGGGCACACCCTGGAAGAAATCGAGCGTGACACCAATCG

CGACAACTTTATGAGCGCGGAAGCTGCGCGCGCGTATGGGTTGATCGATGCGGTGATCGAAAAGCGCCCCGCTTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0R2ZNS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.553	89.1	0.602
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.263	90.047	0.588
clpP	Lactococcus lactis subsp. cremoris KW2	55.44	91.469	0.507
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	53.886	91.469	0.493
clpP	Streptococcus mutans UA159	52.88	90.521	0.479
clpP	Streptococcus pyogenes JRS4	52.88	90.521	0.479
clpP	Streptococcus pyogenes MGAS315	52.88	90.521	0.479
clpP	Streptococcus pneumoniae Rx1	52.105	90.047	0.469
clpP	Streptococcus pneumoniae D39	52.105	90.047	0.469
clpP	Streptococcus pneumoniae R6	52.105	90.047	0.469
clpP	Streptococcus pneumoniae TIGR4	52.105	90.047	0.469
clpP	Streptococcus thermophilus LMG 18311	51.579	90.047	0.464
clpP	Streptococcus thermophilus LMD-9	51.579	90.047	0.464

Detailed information NTG0629333