Detailed information NTG0629332

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: N4P55_RS17735
• Genome accession: NZ_CP104408
• Coordinates: 3912914..3914197 (-)
• Length: 427 a.a.
• NCBI ID: WP_017136464.1
• Uniprot ID: A0A1S2UGL3
• Organism: Pseudomonas fluorescens strain Ant01
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3907914..3919197

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N4P55_RS17725 (N4P55_17740)	-	3909905..3910177 (-)	273	WP_003174819.1	HU family DNA-binding protein	-
N4P55_RS17730 (N4P55_17745)	lon	3910326..3912722 (-)	2397	WP_064453005.1	endopeptidase La	-
N4P55_RS17735 (N4P55_17750)	clpX	3912914..3914197 (-)	1284	WP_017136464.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
N4P55_RS17740 (N4P55_17755)	clpP	3914310..3914945 (-)	636	WP_003238276.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
N4P55_RS17745 (N4P55_17760)	tig	3915037..3916347 (-)	1311	WP_064453006.1	trigger factor	-
N4P55_RS17750 (N4P55_17765)	-	3916594..3916911 (+)	318	WP_156526289.1	hypothetical protein	-
N4P55_RS17775 (N4P55_17790)	folD	3917669..3918523 (+)	855	WP_064453007.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-

Sequence

Protein

• Length: 427 a.a.
• Molecular weight: 46893.52 Da
• Isoelectric Point: 4.8459

>NTDB_id=629332 N4P55_RS17735 WP_017136464.1 3912914..3914197(-) (clpX) [Pseudomonas fluorescens strain Ant01]
MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAESSAHKLPSPKEISGILDQYVI
GQERAKKVLAVAVYNHYKRLNQRDKKGDEVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTRNILFICGGAFSGLEKVIQQRSTRGGIGFGAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPVLATLDELDE
AALIQILTEPKNALTKQYAKLFEMEGVDLEFRTDALKSVAKRALERKTGARGLRSILEGVLLDTMYEIPSQSEVSKVVID
ESVIEGKSKPLYIYENSEPAAKAAPDA

Nucleotide

• Length: 1284 bp

>NTDB_id=629332 N4P55_RS17735 WP_017136464.1 3912914..3914197(-) (clpX) [Pseudomonas fluorescens strain Ant01]
ATGACTGACACCCGCAACGGCGAGGACAACGGCAAGCTGCTCTATTGCTCCTTCTGCGGCAAAAGCCAGCATGAAGTGCG
CAAATTGATTGCCGGCCCCTCGGTGTTTATCTGCGACGAGTGCGTCGACCTGTGCAATGACATCATCCGCGAGGAGGTGC
AGGAAGCCCAGGCCGAGAGCAGCGCGCATAAATTGCCTTCGCCTAAAGAAATCAGCGGCATCCTTGACCAATATGTGATT
GGTCAAGAGCGTGCAAAGAAGGTTCTGGCCGTAGCGGTGTACAACCACTACAAGCGCTTGAATCAGCGTGACAAGAAAGG
CGACGAGGTCGAACTCGGCAAGAGCAACATCTTGCTGATCGGTCCTACTGGCTCGGGTAAAACCTTGCTTGCGGAAACCC
TCGCTCGCCTGCTGAACGTTCCGTTCACCATCGCCGACGCCACCACCCTCACCGAGGCTGGCTACGTGGGTGAAGACGTC
GAGAACATCATTCAGAAATTGCTGCAGAAGTGCGACTACGACGTAGAGAAGGCCCAGATGGGTATTGTCTATATCGACGA
AATCGACAAGATTTCGCGCAAGTCGGACAACCCGTCGATCACCCGGGACGTTTCCGGTGAAGGCGTGCAGCAGGCCCTGT
TGAAACTGATCGAAGGCACGGTAGCTTCCGTACCGCCACAAGGCGGCCGCAAGCACCCGCAGCAGGAATTCCTTCAGGTT
GATACGCGCAACATCCTGTTCATCTGTGGCGGTGCGTTCTCCGGTCTGGAGAAGGTTATTCAGCAGCGTTCCACGCGTGG
CGGCATCGGTTTTGGTGCGGAAGTGCGCAGCAAGGAAGAAGGCAAGAAGGTGGGCGAGTCCCTGCGTGAAGTCGAGCCTG
ACGATCTGGTCAAGTTCGGTCTGATCCCGGAATTCGTTGGCCGTCTGCCCGTCCTGGCCACGTTGGACGAGTTGGATGAG
GCTGCTCTGATTCAGATCCTCACCGAGCCGAAAAACGCCCTGACCAAGCAATATGCCAAGTTGTTCGAAATGGAAGGTGT
AGACCTCGAGTTCCGTACCGACGCACTCAAATCAGTGGCCAAGCGGGCACTGGAGCGCAAGACCGGTGCACGTGGTTTGC
GCTCGATCCTCGAAGGCGTGTTGCTCGACACCATGTACGAAATCCCCTCGCAGTCTGAGGTGAGTAAAGTGGTGATCGAC
GAAAGCGTTATCGAAGGCAAGTCCAAGCCACTGTATATCTACGAAAACAGTGAGCCGGCTGCCAAGGCTGCACCAGACGC
GTAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-311)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-396)

3D structure

• AlphaFold DB: A0A1S2UGL3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	61.084	95.082	0.581
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.188	94.614	0.532