Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LOZ87_RS08675 Genome accession   NZ_CP087391
Coordinates   1703085..1704335 (+) Length   416 a.a.
NCBI ID   WP_007409822.1    Uniprot ID   A7Z4W4
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1698085..1709335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS08645 (LOZ87_08645) yfmH 1698172..1699458 (+) 1287 WP_007409817.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LOZ87_RS08650 (LOZ87_08650) ymfI 1699518..1700246 (+) 729 WP_039063115.1 elongation factor P 5-aminopentanone reductase -
  LOZ87_RS08655 (LOZ87_08655) - 1700322..1700579 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  LOZ87_RS08660 (LOZ87_08660) - 1700707..1701498 (+) 792 WP_007409819.1 DUF3388 domain-containing protein -
  LOZ87_RS08665 (LOZ87_08665) - 1701517..1702413 (+) 897 WP_007409820.1 helix-turn-helix domain-containing protein -
  LOZ87_RS08670 (LOZ87_08670) pgsA 1702486..1703067 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LOZ87_RS08675 (LOZ87_08675) cinA 1703085..1704335 (+) 1251 WP_007409822.1 competence/damage-inducible protein A Machinery gene
  LOZ87_RS08680 (LOZ87_08680) recA 1704506..1705549 (+) 1044 WP_003154145.1 recombinase RecA Machinery gene
  LOZ87_RS08685 (LOZ87_08685) - 1705717..1706898 (+) 1182 WP_007409824.1 serine hydrolase domain-containing protein -
  LOZ87_RS08690 (LOZ87_08690) rny 1707191..1708750 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45012.28 Da        Isoelectric Point: 5.1492

>NTDB_id=629268 LOZ87_RS08675 WP_007409822.1 1703085..1704335(+) (cinA) [Bacillus amyloliquefaciens strain ZF57]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNGITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=629268 LOZ87_RS08675 WP_007409822.1 1703085..1704335(+) (cinA) [Bacillus amyloliquefaciens strain ZF57]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCAGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTG
CCCCGCTCGCTGCTGACGGAGAGGTCACGCTGCGTTTAACGGCGAAACATGCCGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACGGAATTACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGCTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTTCAGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGGATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-413)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4W4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.385

100

0.904
  cinA Streptococcus mitis NCTC 12261

47.847

100

0.481
  cinA Streptococcus mitis SK321

47.368

100

0.476
  cinA Streptococcus pneumoniae TIGR4

46.89

100

0.471
  cinA Streptococcus pneumoniae R6

46.89

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.89

100

0.471
  cinA Streptococcus pneumoniae D39

46.651

100

0.469
  cinA Streptococcus mutans UA159

46.489

99.279

0.462
  cinA Streptococcus suis isolate S10

40.921

93.99

0.385