Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LO000_RS01550 Genome accession   NZ_CP087354
Coordinates   310191..310517 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain DB002     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 305191..315517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO000_RS01525 hemC 305808..306725 (+) 918 WP_031944408.1 hydroxymethylbilane synthase -
  LO000_RS01530 - 306730..307497 (+) 768 WP_000897420.1 uroporphyrinogen-III synthase -
  LO000_RS01535 - 307506..308345 (+) 840 WP_001230201.1 hypothetical protein -
  LO000_RS01540 - 308355..309548 (+) 1194 WP_000681771.1 hypothetical protein -
  LO000_RS01545 - 309556..309996 (+) 441 WP_000661569.1 thioesterase family protein -
  LO000_RS01550 hns 310191..310517 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  LO000_RS01555 gspN 310850..311593 (+) 744 WP_000730342.1 type II secretion system protein N -
  LO000_RS01560 - 311593..312429 (+) 837 WP_000870031.1 type II secretion system protein N -
  LO000_RS01565 gspD 312471..314747 (+) 2277 WP_001196426.1 type II secretion system secretin GspD -
  LO000_RS01570 - 314788..315417 (+) 630 WP_000219967.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=629097 LO000_RS01550 WP_000801427.1 310191..310517(+) (hns) [Acinetobacter baumannii strain DB002]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=629097 LO000_RS01550 WP_000801427.1 310191..310517(+) (hns) [Acinetobacter baumannii strain DB002]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1