Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LO000_RS01840 Genome accession   NZ_CP087354
Coordinates   369265..370125 (-) Length   286 a.a.
NCBI ID   WP_001152277.1    Uniprot ID   A0A009HWK1
Organism   Acinetobacter baumannii strain DB002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 364265..375125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO000_RS01815 - 365156..366466 (+) 1311 WP_000753277.1 tetratricopeptide repeat protein -
  LO000_RS01820 - 366543..366869 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  LO000_RS01825 rlmB 366971..367720 (+) 750 WP_001118150.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LO000_RS01830 - 367756..368670 (+) 915 WP_000075011.1 DMT family transporter -
  LO000_RS01835 coaE 368667..369263 (-) 597 WP_000874125.1 dephospho-CoA kinase -
  LO000_RS01840 pilD 369265..370125 (-) 861 WP_001152277.1 A24 family peptidase Machinery gene
  LO000_RS01845 pilC 370125..371351 (-) 1227 WP_000279216.1 type II secretion system F family protein Machinery gene
  LO000_RS01850 pilB 371381..373093 (-) 1713 WP_001274987.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LO000_RS01855 tpiA 373384..374178 (+) 795 WP_000016931.1 triose-phosphate isomerase -
  LO000_RS01860 secG 374191..374520 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32038.43 Da        Isoelectric Point: 7.1041

>NTDB_id=629098 LO000_RS01840 WP_001152277.1 369265..370125(-) (pilD) [Acinetobacter baumannii strain DB002]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVIVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=629098 LO000_RS01840 WP_001152277.1 369265..370125(-) (pilD) [Acinetobacter baumannii strain DB002]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACTATGTTATGTTCATTAGTAGTCGTCATAGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HWK1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.951

100

0.99
  pilD Acinetobacter nosocomialis M2

98.601

100

0.986
  pilD Vibrio cholerae strain A1552

54.044

95.105

0.514
  pilD Vibrio campbellii strain DS40M4

52.768

94.755

0.5
  pilD Neisseria gonorrhoeae MS11

47.727

92.308

0.441