Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   N597_RS02475 Genome accession   NC_022582
Coordinates   476232..476909 (+) Length   225 a.a.
NCBI ID   WP_023022673.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 471232..481909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS02455 (N597_02545) - 471792..472073 (-) 282 WP_023022665.1 GIY-YIG nuclease family protein -
  N597_RS02460 (N597_02550) - 472063..472809 (-) 747 WP_023022667.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  N597_RS02465 (N597_02555) - 472909..475248 (-) 2340 WP_042507440.1 cation-translocating P-type ATPase -
  N597_RS02470 (N597_02560) - 475386..476129 (+) 744 WP_023022671.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  N597_RS02475 (N597_02565) comEA/celA/cilE 476232..476909 (+) 678 WP_023022673.1 helix-hairpin-helix domain-containing protein Machinery gene
  N597_RS02480 (N597_02570) comEC/celB 476893..479133 (+) 2241 WP_023022674.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N597_RS02485 (N597_02575) - 479196..479861 (+) 666 WP_023022676.1 DUF805 domain-containing protein -
  N597_RS02490 (N597_02580) holA 479839..480876 (+) 1038 WP_023022678.1 DNA polymerase III subunit delta -
  N597_RS02495 (N597_02585) sodA 480948..481553 (+) 606 WP_023022680.1 superoxide dismutase SodA -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24420.36 Da        Isoelectric Point: 4.5145

>NTDB_id=62902 N597_RS02475 WP_023022673.1 476232..476909(+) (comEA/celA/cilE) [Streptococcus ilei]
METWIEKIKEYKLFLGLVAVGLVVGGVFFFWPKPTPQAPETVISQLEMVEQESSPKGDSSFTSSSQERSEEKTDSSQEKI
MVDVKGAVRQAGVYELPVGSRVYDAVQKAGGMTDEANSQSVNLAQKLEDESIVYVAKNGEEVAPVASASAGTTGGENQQK
DGKVNLNTATEAELQTISGIGQKRAQDIIAYREEKGKFQSVDELKNVSGIGQKMLEKLKEHVTVD

Nucleotide


Download         Length: 678 bp        

>NTDB_id=62902 N597_RS02475 WP_023022673.1 476232..476909(+) (comEA/celA/cilE) [Streptococcus ilei]
ATGGAGACATGGATTGAGAAGATCAAGGAATATAAACTGTTTTTAGGCTTGGTTGCTGTGGGGCTAGTGGTGGGAGGAGT
GTTCTTCTTTTGGCCTAAGCCAACCCCACAAGCACCAGAAACAGTCATTTCCCAGTTAGAAATGGTGGAGCAAGAGAGTT
CTCCTAAGGGAGATTCAAGCTTTACTTCGAGCTCTCAGGAGAGAAGTGAGGAAAAGACCGACTCCTCGCAGGAGAAAATC
ATGGTGGATGTGAAGGGGGCTGTCAGACAAGCGGGAGTCTATGAGCTTCCGGTGGGGAGTCGGGTCTATGATGCAGTGCA
AAAAGCAGGAGGGATGACAGACGAAGCCAATAGCCAATCTGTCAACTTGGCTCAAAAATTAGAGGATGAGTCTATTGTCT
ATGTTGCTAAGAATGGAGAAGAAGTGGCGCCAGTAGCGTCTGCTTCTGCTGGGACCACAGGTGGTGAAAACCAGCAAAAG
GATGGCAAGGTTAATCTCAATACAGCCACAGAAGCAGAATTACAGACTATTTCTGGGATTGGTCAAAAACGAGCTCAGGA
TATCATTGCTTATCGAGAGGAAAAAGGAAAATTTCAATCTGTTGATGAATTGAAAAATGTTTCTGGGATTGGCCAAAAGA
TGCTAGAAAAGTTAAAAGAGCATGTTACAGTGGATTAG

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(81-133)

Helix-hairpin-helix motif (HHH_3)

(161-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

52.423

100

0.529
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

51.111

100

0.511
  comEA/celA/cilE Streptococcus mitis SK321

50.667

100

0.507
  comEA/celA/cilE Streptococcus pneumoniae D39

50.22

100

0.507
  comEA/celA/cilE Streptococcus pneumoniae Rx1

50.22

100

0.507
  comEA/celA/cilE Streptococcus pneumoniae R6

50.22

100

0.507
  comEA Streptococcus thermophilus LMD-9

44.541

100

0.453
  comEA Lactococcus lactis subsp. cremoris KW2

39.474

100

0.4
  comEA Latilactobacillus sakei subsp. sakei 23K

34.016

100

0.369

Multiple sequence alignment