Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LDL65_RS13320 Genome accession   NZ_CP087111
Coordinates   2889097..2890422 (+) Length   441 a.a.
NCBI ID   WP_090367270.1    Uniprot ID   -
Organism   Pseudomonas palleroniana strain X49     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2884097..2895422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDL65_RS13300 (LDL65_13300) - 2884169..2886634 (-) 2466 WP_060755207.1 penicillin-binding protein 1A -
  LDL65_RS13305 (LDL65_13305) pilM 2886864..2887520 (+) 657 WP_104996200.1 type IV pilus assembly protein PilM -
  LDL65_RS13310 (LDL65_13310) - 2887517..2888068 (+) 552 WP_244701680.1 PilN domain-containing protein -
  LDL65_RS13315 (LDL65_13315) - 2888065..2889027 (+) 963 WP_244384556.1 pilus assembly protein PilP -
  LDL65_RS13320 (LDL65_13320) pilQ 2889097..2890422 (+) 1326 WP_090367270.1 type IV pilus secretin PilQ family protein Machinery gene
  LDL65_RS13325 (LDL65_13325) aroK 2890427..2890945 (+) 519 WP_003187914.1 shikimate kinase AroK -
  LDL65_RS13330 (LDL65_13330) aroB 2891071..2892171 (+) 1101 WP_060755203.1 3-dehydroquinate synthase -
  LDL65_RS13335 (LDL65_13335) - 2892182..2893753 (+) 1572 WP_104995311.1 AAA family ATPase -

Sequence

Protein


Download         Length: 441 a.a.        Molecular weight: 47997.89 Da        Isoelectric Point: 4.7327

>NTDB_id=626677 LDL65_RS13320 WP_090367270.1 2889097..2890422(+) (pilQ) [Pseudomonas palleroniana strain X49]
MAAAVPNRLDLIQLPPPGEIASDAYSGEKLNLNFQNIELRAVLQQIADIAGLNLVASDEVQGSITLRLKDVPWDQALDLV
LHSKGLDKRLKAGVLLVAPADELAARELLTLESRRQMAELAPLRRELLQVNYAKAADLAKLFQSVNGLEGTTDERGSVAV
DDRTNNIIAYQTGERLEELRRIVAQLDVPVRQVMIEARIVEANVDYDKSLGARWGGGLSRGNWGAGGIRKPLPEGTEPPQ
EPPTSPFVDLGSLTGTSGLGIAYITDNLLLDLELTAMEKTGNGEIVSQPKVVTADKETARILKGTEIPYQESSSSGATSV
SFKEASLSLEVTPQITPDDRVIMEVKVTKDEPDYLNKLNDVPPIKKNEVNAKVLVKDGETIVIGGVFSNTQSKVVDKVPF
LGDVPYLGRLFRRDVLAEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 1326 bp        

>NTDB_id=626677 LDL65_RS13320 WP_090367270.1 2889097..2890422(+) (pilQ) [Pseudomonas palleroniana strain X49]
ATGGCTGCTGCTGTGCCCAATCGCCTGGACTTGATCCAGTTGCCCCCTCCCGGGGAGATCGCTTCGGATGCGTATTCCGG
CGAGAAACTGAACCTCAATTTCCAGAACATCGAACTGCGCGCAGTGCTGCAACAAATTGCCGACATTGCCGGCCTCAATC
TTGTGGCCAGCGACGAAGTGCAAGGCTCGATCACCTTGCGGCTCAAGGACGTGCCCTGGGATCAGGCGCTCGACCTGGTA
TTGCACAGCAAAGGCTTGGATAAACGGCTGAAGGCCGGCGTATTGCTGGTCGCTCCTGCCGATGAGTTGGCTGCTCGCGA
GCTGCTGACGCTGGAGTCGCGCAGGCAGATGGCTGAACTGGCACCGTTGCGTCGAGAGTTGTTGCAGGTCAACTACGCCA
AGGCGGCAGACCTGGCCAAGCTGTTCCAATCCGTCAACGGGCTCGAAGGCACTACCGATGAGCGTGGTTCGGTTGCGGTG
GATGACCGCACCAACAACATCATTGCCTACCAGACCGGGGAGCGGCTGGAGGAGTTGCGGCGCATTGTGGCGCAACTCGA
TGTTCCGGTGCGGCAGGTCATGATCGAGGCGCGGATCGTCGAGGCCAATGTCGATTATGACAAAAGCCTGGGCGCGCGTT
GGGGCGGTGGGCTCAGCCGGGGGAACTGGGGCGCCGGCGGTATTCGCAAACCGCTGCCTGAAGGTACCGAGCCGCCGCAA
GAGCCACCCACGTCGCCCTTTGTCGACCTGGGCTCGCTGACGGGGACGTCAGGCTTGGGTATCGCTTACATCACCGACAA
CCTGTTGCTGGATCTTGAGCTGACGGCCATGGAGAAAACCGGCAACGGTGAAATCGTCTCTCAGCCCAAAGTGGTGACCG
CCGACAAGGAAACTGCGCGCATCCTCAAAGGCACCGAGATTCCCTATCAGGAGTCCAGCTCCAGCGGCGCCACCTCGGTG
TCGTTCAAGGAGGCTTCGTTGTCCCTGGAAGTGACCCCGCAAATCACTCCGGACGACCGGGTCATCATGGAGGTCAAGGT
CACCAAGGATGAGCCGGACTATCTGAACAAACTTAACGATGTGCCGCCGATCAAGAAAAACGAGGTCAATGCCAAGGTGT
TGGTCAAGGATGGCGAGACCATCGTGATTGGCGGGGTTTTCTCCAATACCCAAAGCAAAGTGGTAGATAAAGTGCCATTT
TTGGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGCGATGTGCTGGCGGAGAAAAAATCCGAGCTGCTGGTATTCCT
GACTCCGCGTATTATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(53-99)

Bacterial type II and III secretion system protein (Secretin)

(276-432)

Bacterial type II/III secretion system short domain (Secretin_N)

(127-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

71.167

99.093

0.705
  comQ Acinetobacter baylyi ADP1

43.459

100

0.444
  pilQ Acinetobacter baumannii D1279779

42.026

100

0.442
  pilQ Acinetobacter baumannii strain A118

42.026

100

0.442
  pilQ Legionella pneumophila strain Lp02

43.794

96.825

0.424
  pilQ Legionella pneumophila strain ERS1305867

43.326

96.825

0.42
  pilQ Vibrio campbellii strain DS40M4

43.396

96.145

0.417
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

43.78

94.785

0.415
  pilQ Vibrio cholerae strain A1552

43.78

94.785

0.415