Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HQN46_RS18075 Genome accession   NZ_CP087103
Coordinates   3569423..3570661 (-) Length   412 a.a.
NCBI ID   WP_085450615.1    Uniprot ID   -
Organism   Bacillus toyonensis strain HA0190     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3564423..3575661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN46_RS18055 (HQN46_0018055) spoVS 3564846..3565106 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  HQN46_RS18060 (HQN46_0018060) - 3565256..3566050 (-) 795 WP_001221099.1 TIGR00282 family metallophosphoesterase -
  HQN46_RS18065 (HQN46_0018065) rny 3566198..3567763 (-) 1566 WP_000204713.1 ribonuclease Y -
  HQN46_RS18070 (HQN46_0018070) recA 3568247..3569278 (-) 1032 WP_001283854.1 recombinase RecA Machinery gene
  HQN46_RS18075 (HQN46_0018075) cinA 3569423..3570661 (-) 1239 WP_085450615.1 competence/damage-inducible protein CinA Machinery gene
  HQN46_RS18080 (HQN46_0018080) pgsA 3570682..3571260 (-) 579 WP_001052980.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HQN46_RS18085 (HQN46_0018085) - 3571324..3572253 (-) 930 WP_000137454.1 helix-turn-helix domain-containing protein -
  HQN46_RS18090 (HQN46_0018090) - 3572275..3573060 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  HQN46_RS18095 (HQN46_0018095) - 3573199..3573447 (-) 249 WP_000114447.1 DUF3243 domain-containing protein -
  HQN46_RS18100 (HQN46_0018100) ymfI 3573523..3574236 (-) 714 WP_000759600.1 elongation factor P 5-aminopentanone reductase -
  HQN46_RS18105 (HQN46_0018105) yfmH 3574337..3575623 (-) 1287 WP_000411962.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45448.78 Da        Isoelectric Point: 5.4733

>NTDB_id=626611 HQN46_RS18075 WP_085450615.1 3569423..3570661(-) (cinA) [Bacillus toyonensis strain HA0190]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDENALALISDYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMRPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNAHEAEKLIQHMED
LILERVGEFFYGYDQEFLHYKAIKLLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=626611 HQN46_RS18075 WP_085450615.1 3569423..3570661(-) (cinA) [Bacillus toyonensis strain HA0190]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGATATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGGGGAAGAGCTTGTATATGACGAAAATGCATTAGCATTAATAAGCGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTGAATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGTTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAGGCCAATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTCTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCGACAATCGCCCCGCTTGCGAATG
ATGGAGAAGTAACATTACGTTTAACTGCGAAGCATCAAAATGCTCATGAAGCGGAGAAACTCATTCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCACTATAAGGCGATAAAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCAGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGACGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGGTTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.223

100

0.592
  cinA Streptococcus mitis SK321

47.017

100

0.478
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379