Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   LN051_RS05750 Genome accession   NZ_CP086654
Coordinates   1183366..1183686 (+) Length   106 a.a.
NCBI ID   WP_274704558.1    Uniprot ID   -
Organism   Staphylococcus ratti strain CCM 9025     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1178366..1188686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN051_RS05720 (LN051_05720) - 1179148..1179351 (+) 204 WP_229291588.1 YqgQ family protein -
  LN051_RS05725 (LN051_05725) - 1179348..1180334 (+) 987 WP_229291589.1 ROK family glucokinase -
  LN051_RS05730 (LN051_05730) - 1180335..1180646 (+) 312 WP_229291590.1 MTH1187 family thiamine-binding protein -
  LN051_RS05735 (LN051_05735) - 1180662..1181285 (+) 624 WP_229291591.1 MBL fold metallo-hydrolase -
  LN051_RS05740 (LN051_05740) comGA 1181343..1182317 (+) 975 WP_229291592.1 competence type IV pilus ATPase ComGA Machinery gene
  LN051_RS05745 (LN051_05745) comGB 1182286..1183353 (+) 1068 WP_229291593.1 competence type IV pilus assembly protein ComGB -
  LN051_RS05750 (LN051_05750) comGC 1183366..1183686 (+) 321 WP_274704558.1 competence type IV pilus major pilin ComGC Machinery gene
  LN051_RS11500 - 1183664..1183879 (+) 216 WP_420853963.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LN051_RS05755 (LN051_05755) - 1184346..1184783 (+) 438 WP_229291594.1 competence type IV pilus minor pilin ComGF -
  LN051_RS05760 (LN051_05760) - 1184942..1185457 (+) 516 WP_229293631.1 shikimate kinase -
  LN051_RS05765 (LN051_05765) gcvT 1185635..1186723 (+) 1089 WP_229291595.1 glycine cleavage system aminomethyltransferase GcvT -
  LN051_RS05770 (LN051_05770) gcvPA 1186736..1188085 (+) 1350 WP_229291596.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11868.06 Da        Isoelectric Point: 9.5857

>NTDB_id=625963 LN051_RS05750 WP_274704558.1 1183366..1183686(+) (comGC) [Staphylococcus ratti strain CCM 9025]
MKNILNLFKNNKGFTLIEMLLVLLIISVLLILIIPNIAKQSDHIQKTGCSAQLKLVDSQVEAYTLKFNRKPTTIDDLVQE
GYIKEHQKKCKSGETITLRGGEAVVS

Nucleotide


Download         Length: 321 bp        

>NTDB_id=625963 LN051_RS05750 WP_274704558.1 1183366..1183686(+) (comGC) [Staphylococcus ratti strain CCM 9025]
TTGAAAAACATTCTAAACTTATTTAAAAACAATAAAGGCTTCACATTAATAGAAATGTTACTCGTATTATTGATTATTAG
TGTATTATTAATACTCATTATTCCAAATATAGCTAAGCAGTCGGATCATATTCAAAAAACAGGCTGTTCAGCACAATTAA
AATTAGTTGATAGTCAAGTTGAAGCATATACACTCAAATTCAATCGTAAACCAACAACGATTGATGACTTAGTTCAAGAG
GGTTATATCAAAGAACATCAAAAGAAGTGTAAAAGTGGAGAGACCATTACTTTACGTGGTGGCGAAGCTGTTGTCTCATA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

66.019

97.17

0.642
  comGC Staphylococcus aureus N315

66.019

97.17

0.642
  comGC/cglC Streptococcus mitis SK321

41.748

97.17

0.406
  comGC Bacillus subtilis subsp. subtilis str. 168

43.299

91.509

0.396
  comYC Streptococcus suis isolate S10

52.564

73.585

0.387
  comGC/cglC Streptococcus mitis NCTC 12261

43.478

86.792

0.377
  comGC/cglC Streptococcus pneumoniae TIGR4

42.391

86.792

0.368
  comGC/cglC Streptococcus pneumoniae R6

42.391

86.792

0.368
  comGC/cglC Streptococcus pneumoniae Rx1

42.391

86.792

0.368
  comGC/cglC Streptococcus pneumoniae D39

42.391

86.792

0.368