Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   NYR19_RS11415 Genome accession   NZ_CP103874
Coordinates   2418629..2420437 (-) Length   602 a.a.
NCBI ID   WP_302509428.1    Uniprot ID   -
Organism   Gallibacterium anatis strain TH22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2413629..2425437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR19_RS11390 (NYR19_11400) - 2414204..2414665 (-) 462 WP_039159330.1 tripartite tricarboxylate transporter TctB family protein -
  NYR19_RS11395 (NYR19_11405) - 2414701..2415636 (-) 936 WP_039171115.1 tripartite tricarboxylate transporter substrate binding protein -
  NYR19_RS11400 (NYR19_11410) dhaL 2415704..2416330 (-) 627 WP_039159334.1 dihydroxyacetone kinase subunit DhaL -
  NYR19_RS11405 (NYR19_11415) - 2416332..2417336 (-) 1005 WP_302508347.1 dihydroxyacetone kinase subunit DhaK -
  NYR19_RS11410 (NYR19_11420) - 2417358..2418374 (-) 1017 WP_210641646.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA -
  NYR19_RS11415 (NYR19_11425) recQ 2418629..2420437 (-) 1809 WP_302509428.1 DNA helicase RecQ Machinery gene
  NYR19_RS11420 (NYR19_11430) - 2420457..2421299 (-) 843 WP_302508349.1 phospholipase A -
  NYR19_RS11425 (NYR19_11435) cyaY 2421315..2421629 (-) 315 WP_018345937.1 iron donor protein CyaY -
  NYR19_RS11430 (NYR19_11440) - 2421740..2421859 (+) 120 WP_039142951.1 lipoprotein -
  NYR19_RS11435 (NYR19_11445) lysA 2421881..2423134 (+) 1254 WP_302508354.1 diaminopimelate decarboxylase -
  NYR19_RS11440 (NYR19_11450) - 2423325..2423687 (+) 363 WP_021460908.1 PepSY domain-containing protein -
  NYR19_RS11445 (NYR19_11455) - 2423881..2425182 (+) 1302 WP_285097743.1 MFS transporter -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68955.17 Da        Isoelectric Point: 9.2598

>NTDB_id=625963 NYR19_RS11415 WP_302509428.1 2418629..2420437(-) (recQ) [Gallibacterium anatis strain TH22]
MQSTGLIRAKSILQDVFGYQQFRQGQQQIIEATLRGQSSFILMATGGGKSLCYQIPALCFSGLTLVISPLIALMQDQVDQ
LTANGVAAAYLNSSQTLQQQREIEQQALSGKLKLLYISPEKVMTTAFFYFIQQCQVSFIAIDEAHCISQWGHDFRPEYSQ
LRSLTRVFPHIPIMALTATADRVTREDILELLNLQQPFVYIGSFDRPNIRYTVVEKFKPQEQLLKFVKSQKGKSGIIYAN
SRNKVERLAEMLQRKGISAKAYHAGFSNEIREQVQHDFQRDNIQIIVATIAFGMGINKPNIRFVLHYDLPRSIEAYYQET
GRAGRDDLPAEAVLFYDHQDYLWLNKLLQEKPDSSQKMIEQHKLQAMGEFAEAQTCRRLVLLNYFAEHRHQPCNNCDICL
NPPKKYDGLIDAQKILSTVYRTGQKFGSYYVIAVLRGVQNQKIQELQHDKLSVFGIGKDKSQEYWHSVIRQLIHLGFLSQ
NIANYSALQLTEAARPILRGEMTLSLATPRQNLSMINHAHRYQAKQGDRELFNQLRKLRKQLSDRDNIPPYAVFNDATLE
EMAREMPTTLSEMLQINGVGFKKLERYAQPFLAVITTYSSNK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=625963 NYR19_RS11415 WP_302509428.1 2418629..2420437(-) (recQ) [Gallibacterium anatis strain TH22]
ATGCAATCGACCGGTCTTATCCGTGCAAAGTCCATTCTTCAAGACGTTTTTGGCTATCAACAATTTCGTCAAGGTCAGCA
GCAAATTATTGAAGCAACATTGCGAGGTCAAAGTAGCTTTATTTTGATGGCAACAGGTGGAGGAAAATCGCTTTGCTACC
AAATTCCAGCACTCTGTTTTTCTGGATTGACATTAGTGATTTCTCCTTTGATTGCTTTGATGCAAGATCAGGTTGATCAG
CTTACGGCAAACGGTGTGGCAGCAGCTTATCTAAATTCAAGCCAAACCTTGCAACAGCAACGAGAAATTGAACAACAGGC
GTTATCCGGAAAATTAAAGTTACTCTATATTTCGCCGGAAAAAGTGATGACTACGGCGTTTTTCTATTTTATTCAGCAGT
GTCAGGTGAGTTTTATTGCGATTGATGAAGCTCATTGTATCTCGCAATGGGGGCACGATTTTCGTCCGGAATATTCACAG
CTACGCAGTTTAACGCGTGTTTTTCCTCACATTCCGATTATGGCACTAACCGCAACGGCAGATCGCGTTACTCGAGAAGA
CATTCTGGAATTGCTTAATTTACAGCAACCCTTTGTTTATATTGGGAGTTTTGATAGACCCAATATCCGTTATACCGTAG
TGGAAAAATTTAAACCGCAAGAACAGTTGCTTAAATTTGTCAAATCGCAAAAAGGTAAGAGTGGCATTATTTACGCCAAC
AGTCGTAACAAAGTGGAAAGATTGGCGGAAATGTTGCAGCGTAAAGGGATTTCCGCAAAGGCGTATCACGCCGGTTTTAG
CAATGAAATCAGGGAGCAGGTTCAACACGATTTCCAACGTGACAATATCCAAATTATTGTTGCCACCATTGCATTCGGAA
TGGGCATTAATAAACCGAATATCCGTTTTGTGTTGCATTATGATCTACCGAGAAGTATTGAGGCCTATTATCAGGAAACC
GGTCGGGCAGGGCGTGATGATCTGCCGGCGGAAGCGGTGCTGTTTTATGATCATCAAGATTATTTGTGGTTGAATAAATT
ATTGCAAGAAAAACCCGATTCATCACAAAAAATGATTGAACAGCATAAATTGCAAGCAATGGGCGAATTTGCCGAAGCAC
AAACTTGTCGCCGCTTGGTGTTACTGAATTATTTTGCCGAACATCGCCATCAACCTTGCAATAACTGCGATATTTGCCTT
AACCCACCGAAAAAATATGATGGTTTGATTGATGCGCAAAAAATCCTTTCTACGGTTTATCGTACCGGACAAAAATTTGG
TAGTTATTATGTGATTGCTGTATTGCGAGGCGTGCAAAATCAGAAAATTCAAGAGTTACAACACGATAAATTGTCCGTTT
TTGGTATTGGCAAGGATAAATCTCAAGAATATTGGCATAGTGTGATCCGTCAATTAATTCATTTAGGTTTTTTAAGTCAA
AATATTGCCAATTATTCAGCATTACAACTTACCGAAGCGGCCAGACCGATTTTGCGTGGAGAAATGACATTATCGCTAGC
GACACCAAGACAAAATCTTTCAATGATTAACCACGCCCATCGCTATCAAGCGAAGCAGGGTGATCGGGAACTATTCAATC
AATTACGTAAACTCAGAAAACAACTTTCTGATCGGGATAACATTCCGCCTTATGCTGTATTCAATGATGCTACATTGGAA
GAAATGGCACGAGAAATGCCAACCACACTTTCTGAAATGTTACAAATCAATGGAGTAGGGTTTAAAAAATTAGAACGCTA
TGCCCAACCGTTTTTGGCGGTGATTACTACATATAGTAGTAATAAATAG

Domains

Predicted by InterProScan.

RQC domain (RQC)

(402-511)

DEAD/DEAH box helicase (DEAD)

(25-182)

Helicase conserved C-terminal domain (Helicase_C)

(222-325)

HRDC domain (HRDC)

(529-595)

RecQ zinc-binding (RecQ_Zn_bind)

(339-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

38.255

99.003

0.379