Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | LN051_RS05740 | Genome accession | NZ_CP086654 |
| Coordinates | 1181343..1182317 (+) | Length | 324 a.a. |
| NCBI ID | WP_229291592.1 | Uniprot ID | - |
| Organism | Staphylococcus ratti strain CCM 9025 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1176343..1187317
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LN051_RS05705 (LN051_05705) | rpmG | 1176872..1177036 (+) | 165 | WP_257053265.1 | 50S ribosomal protein L33 | - |
| LN051_RS05710 (LN051_05710) | - | 1177150..1177710 (+) | 561 | WP_229291586.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| LN051_RS05715 (LN051_05715) | - | 1177707..1179146 (+) | 1440 | WP_229291587.1 | rhomboid family intramembrane serine protease | - |
| LN051_RS05720 (LN051_05720) | - | 1179148..1179351 (+) | 204 | WP_229291588.1 | YqgQ family protein | - |
| LN051_RS05725 (LN051_05725) | - | 1179348..1180334 (+) | 987 | WP_229291589.1 | ROK family glucokinase | - |
| LN051_RS05730 (LN051_05730) | - | 1180335..1180646 (+) | 312 | WP_229291590.1 | MTH1187 family thiamine-binding protein | - |
| LN051_RS05735 (LN051_05735) | - | 1180662..1181285 (+) | 624 | WP_229291591.1 | MBL fold metallo-hydrolase | - |
| LN051_RS05740 (LN051_05740) | comGA | 1181343..1182317 (+) | 975 | WP_229291592.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LN051_RS05745 (LN051_05745) | comGB | 1182286..1183353 (+) | 1068 | WP_229291593.1 | competence type IV pilus assembly protein ComGB | - |
| LN051_RS05750 (LN051_05750) | comGC | 1183366..1183686 (+) | 321 | WP_274704558.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| LN051_RS11500 | - | 1183664..1183879 (+) | 216 | WP_420853963.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| LN051_RS05755 (LN051_05755) | - | 1184346..1184783 (+) | 438 | WP_229291594.1 | competence type IV pilus minor pilin ComGF | - |
| LN051_RS05760 (LN051_05760) | - | 1184942..1185457 (+) | 516 | WP_229293631.1 | shikimate kinase | - |
| LN051_RS05765 (LN051_05765) | gcvT | 1185635..1186723 (+) | 1089 | WP_229291595.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36950.59 Da Isoelectric Point: 6.5001
>NTDB_id=625962 LN051_RS05740 WP_229291592.1 1181343..1182317(+) (comGA) [Staphylococcus ratti strain CCM 9025]
MQLLLDHVIQYAINHEASDIHFIPNQSQVDVKLRVKDTLKYFDTLNLDTYQKILTLLKFKAGLDVSSRHKAQSGRYIYEF
ENLFYLRISTLPLNLGTESCVIRITPQLFQTDKIQTSNDIRNIMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEKLNLNI
ITIEDPVEQLVNGVTQISVNEKADITYGSSLKAILRCDPDVILIGEIRDGLIAKDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGITQQDLTQALNLIVNQRLITTNTDERRLVYETMTKDDIGYFLNHDFALPKTFKSLNDKLYELQKEGEIDEHTLR
KYQK
MQLLLDHVIQYAINHEASDIHFIPNQSQVDVKLRVKDTLKYFDTLNLDTYQKILTLLKFKAGLDVSSRHKAQSGRYIYEF
ENLFYLRISTLPLNLGTESCVIRITPQLFQTDKIQTSNDIRNIMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEKLNLNI
ITIEDPVEQLVNGVTQISVNEKADITYGSSLKAILRCDPDVILIGEIRDGLIAKDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGITQQDLTQALNLIVNQRLITTNTDERRLVYETMTKDDIGYFLNHDFALPKTFKSLNDKLYELQKEGEIDEHTLR
KYQK
Nucleotide
Download Length: 975 bp
>NTDB_id=625962 LN051_RS05740 WP_229291592.1 1181343..1182317(+) (comGA) [Staphylococcus ratti strain CCM 9025]
ATGCAATTACTGTTAGATCATGTAATACAATATGCAATTAATCATGAAGCTTCAGATATCCACTTCATCCCCAATCAATC
TCAAGTAGACGTAAAGCTAAGAGTGAAAGATACATTAAAATACTTTGACACACTCAATCTAGATACGTATCAAAAAATCT
TAACACTTTTAAAATTCAAAGCAGGATTAGATGTTTCTTCTAGGCATAAAGCGCAAAGCGGAAGATACATTTATGAATTT
GAAAATTTATTTTATTTAAGGATTTCAACTTTACCTTTAAATTTAGGAACTGAAAGTTGCGTTATTAGAATAACCCCTCA
ATTATTTCAAACAGATAAAATACAAACATCAAACGATATCCGAAATATTATGGAGAAAAAACAAGGTTTAATATTATTTA
GCGGTCCTACAGGAGCTGGAAAAAGCACACTAATGTATCAGATGGTCGTTTATGCCAAAGAAAAACTGAACCTAAACATT
ATTACGATTGAAGATCCGGTAGAACAGCTCGTAAATGGTGTCACCCAAATTTCAGTAAACGAAAAAGCAGACATTACCTA
TGGTTCTTCTTTAAAAGCAATATTACGCTGTGATCCAGATGTTATCTTAATCGGAGAAATCAGAGACGGATTGATTGCCA
AAGATGTGATACAAGCCAGTTTAAGTGGGCATCTTGTATTGTCTACAATACACGCAAATGATTGTCAAGGCGTGCTCTTA
CGTCTCATAGAAATGGGCATTACTCAGCAAGACTTAACTCAAGCTTTAAATTTAATTGTCAATCAGCGTTTAATTACAAC
AAATACAGATGAGCGTCGTTTAGTTTATGAAACGATGACTAAAGATGATATTGGCTATTTTTTAAACCATGACTTTGCCT
TGCCTAAAACTTTTAAAAGTTTAAATGATAAACTTTATGAATTGCAAAAAGAAGGGGAGATTGATGAACATACGCTACGA
AAATATCAAAAATAA
ATGCAATTACTGTTAGATCATGTAATACAATATGCAATTAATCATGAAGCTTCAGATATCCACTTCATCCCCAATCAATC
TCAAGTAGACGTAAAGCTAAGAGTGAAAGATACATTAAAATACTTTGACACACTCAATCTAGATACGTATCAAAAAATCT
TAACACTTTTAAAATTCAAAGCAGGATTAGATGTTTCTTCTAGGCATAAAGCGCAAAGCGGAAGATACATTTATGAATTT
GAAAATTTATTTTATTTAAGGATTTCAACTTTACCTTTAAATTTAGGAACTGAAAGTTGCGTTATTAGAATAACCCCTCA
ATTATTTCAAACAGATAAAATACAAACATCAAACGATATCCGAAATATTATGGAGAAAAAACAAGGTTTAATATTATTTA
GCGGTCCTACAGGAGCTGGAAAAAGCACACTAATGTATCAGATGGTCGTTTATGCCAAAGAAAAACTGAACCTAAACATT
ATTACGATTGAAGATCCGGTAGAACAGCTCGTAAATGGTGTCACCCAAATTTCAGTAAACGAAAAAGCAGACATTACCTA
TGGTTCTTCTTTAAAAGCAATATTACGCTGTGATCCAGATGTTATCTTAATCGGAGAAATCAGAGACGGATTGATTGCCA
AAGATGTGATACAAGCCAGTTTAAGTGGGCATCTTGTATTGTCTACAATACACGCAAATGATTGTCAAGGCGTGCTCTTA
CGTCTCATAGAAATGGGCATTACTCAGCAAGACTTAACTCAAGCTTTAAATTTAATTGTCAATCAGCGTTTAATTACAAC
AAATACAGATGAGCGTCGTTTAGTTTATGAAACGATGACTAAAGATGATATTGGCTATTTTTTAAACCATGACTTTGCCT
TGCCTAAAACTTTTAAAAGTTTAAATGATAAACTTTATGAATTGCAAAAAGAAGGGGAGATTGATGAACATACGCTACGA
AAATATCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
57.895 |
99.691 |
0.577 |
| comGA | Staphylococcus aureus N315 |
57.895 |
99.691 |
0.577 |