NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	NYR19_RS03160	Genome accession	NZ_CP103874
Coordinates	661761..662348 (-)	Length	195 a.a.
NCBI ID	WP_039096417.1	Uniprot ID	-
Organism	Gallibacterium anatis strain TH22
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 656761..667348

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR19_RS03140 (NYR19_03140)	fruB	657147..658304 (-)	1158	Protein_590	fused PTS fructose transporter subunit IIA/HPr protein	-
NYR19_RS03145 (NYR19_03145)	-	658530..659831 (-)	1302	WP_013745612.1	anaerobic C4-dicarboxylate transporter	-
NYR19_RS03150 (NYR19_03150)	-	659962..660360 (-)	399	WP_018345828.1	YbaN family protein	-
NYR19_RS03155 (NYR19_03155)	clpX	660502..661749 (-)	1248	WP_013745610.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
NYR19_RS03160 (NYR19_03160)	clpP	661761..662348 (-)	588	WP_039096417.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
NYR19_RS03165 (NYR19_03165)	tig	662489..663790 (-)	1302	WP_302508796.1	trigger factor	-
NYR19_RS03170 (NYR19_03170)	-	663962..664528 (-)	567	WP_285098384.1	cytochrome b	-
NYR19_RS03175 (NYR19_03175)	-	664640..665455 (+)	816	WP_039084874.1	NAD-dependent dehydratase	-

Sequence

Protein

Download Length: 195 a.a. Molecular weight: 21658.99 Da Isoelectric Point: 5.6149

                                >NTDB_id=625931 NYR19_RS03160 WP_039096417.1 661761..662348(-) (clpP) [Gallibacterium anatis strain TH22]

MALVPMVVEQTARGERAFDIYSRLLKERVIFLNGQVEDNMANLIVAQLLFLEAENPDEDINLYINSPGGVVTAGMAIYDT

MQFIKPDVRTLCMGQACSMGAFLLAGGAAGKRFALPHARIMIHQPLGGYRGQASDIQIHAQEILKIKDTLNQRLAFHTGQ

PLEVVERDTDRDNFMSAKAAKEYGLIDEVLTHRQL

Nucleotide

Download Length: 588 bp

                                >NTDB_id=625931 NYR19_RS03160 WP_039096417.1 661761..662348(-) (clpP) [Gallibacterium anatis strain TH22]

ATGGCATTAGTCCCAATGGTTGTCGAACAAACTGCTCGTGGTGAACGTGCTTTCGATATTTATTCTCGCTTACTGAAAGA

ACGTGTTATTTTTCTTAATGGGCAAGTTGAAGACAATATGGCCAACTTAATCGTTGCTCAATTGCTATTCCTTGAAGCGG

AAAACCCGGATGAAGATATTAATCTTTATATCAATTCTCCCGGCGGCGTTGTCACTGCCGGTATGGCAATTTACGATACA

ATGCAATTTATCAAACCTGATGTGCGTACTCTTTGTATGGGGCAGGCTTGTTCTATGGGCGCATTTTTATTGGCAGGCGG

TGCAGCCGGAAAACGTTTTGCACTTCCACACGCTCGCATAATGATTCACCAACCTTTAGGCGGATATCGTGGTCAAGCTT

CGGATATTCAGATTCACGCACAGGAAATCCTTAAAATCAAAGATACTTTAAATCAACGTCTTGCTTTTCATACAGGCCAA

CCATTGGAAGTTGTCGAACGCGATACTGATCGTGATAACTTTATGTCTGCCAAAGCCGCTAAAGAATATGGTTTAATTGA

TGAAGTATTAACTCATCGCCAACTATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.01	99.487	0.667
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.426	96.41	0.631
clpP	Streptococcus thermophilus LMG 18311	55.385	100	0.554
clpP	Streptococcus thermophilus LMD-9	55.385	100	0.554
clpP	Streptococcus pneumoniae R6	54.359	100	0.544
clpP	Streptococcus pneumoniae Rx1	54.359	100	0.544
clpP	Streptococcus pneumoniae D39	54.359	100	0.544
clpP	Streptococcus pneumoniae TIGR4	54.359	100	0.544
clpP	Lactococcus lactis subsp. cremoris KW2	53.333	100	0.533
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	52.821	100	0.528
clpP	Streptococcus mutans UA159	52.041	100	0.523
clpP	Streptococcus pyogenes JRS4	50.769	100	0.508
clpP	Streptococcus pyogenes MGAS315	50.769	100	0.508

Detailed information NTG0625931