Detailed information NTG0625930

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: NYR19_RS03155
• Genome accession: NZ_CP103874
• Coordinates: 660502..661749 (-)
• Length: 415 a.a.
• NCBI ID: WP_013745610.1
• Uniprot ID: A0AB36DXJ3
• Organism: Gallibacterium anatis strain TH22
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 655502..666749

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR19_RS03135 (NYR19_03135)	fruK	656204..657142 (-)	939	WP_302508792.1	1-phosphofructokinase	-
NYR19_RS03140 (NYR19_03140)	fruB	657147..658304 (-)	1158	Protein_590	fused PTS fructose transporter subunit IIA/HPr protein	-
NYR19_RS03145 (NYR19_03145)	-	658530..659831 (-)	1302	WP_013745612.1	anaerobic C4-dicarboxylate transporter	-
NYR19_RS03150 (NYR19_03150)	-	659962..660360 (-)	399	WP_018345828.1	YbaN family protein	-
NYR19_RS03155 (NYR19_03155)	clpX	660502..661749 (-)	1248	WP_013745610.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
NYR19_RS03160 (NYR19_03160)	clpP	661761..662348 (-)	588	WP_039096417.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
NYR19_RS03165 (NYR19_03165)	tig	662489..663790 (-)	1302	WP_302508796.1	trigger factor	-
NYR19_RS03170 (NYR19_03170)	-	663962..664528 (-)	567	WP_285098384.1	cytochrome b	-
NYR19_RS03175 (NYR19_03175)	-	664640..665455 (+)	816	WP_039084874.1	NAD-dependent dehydratase	-

Sequence

Protein

• Length: 415 a.a.
• Molecular weight: 46156.76 Da
• Isoelectric Point: 4.9442

>NTDB_id=625930 NYR19_RS03155 WP_013745610.1 660502..661749(-) (clpX) [Gallibacterium anatis strain TH22]
MSDKPENNEKFYCSLCGKEKHEVGKLIAGVSGYICNECVETCHDLLMEEANKHQKEQEQEKPLEKLPTPHQIRAHLDDYV
IGQDQAKKILSVAVYNHYKRLRNNETDLDVELGKSNILLIGPTGSGKTLLAQTLARQINVPFAIADATTLTEAGYVGEDV
ENIIQRLLQNCDYDTEKAEQGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLKV
DTSKILFICGGAFSGLDKIIEKRTHKDRGIGFNANVQSKEKEHDIGELFAQVETEDLIKFGLIPEFVGRLPVVASLAELD
EEALIRILTVPKNALIKQYQALFTLENVELEFTPEALTAIAKKALARKTGARGLRSIVEGVLLDTMYDLPSLEGLKKVVV
DQDVIDNQALPKLEY

Nucleotide

• Length: 1248 bp

>NTDB_id=625930 NYR19_RS03155 WP_013745610.1 660502..661749(-) (clpX) [Gallibacterium anatis strain TH22]
ATGTCAGATAAACCAGAAAACAACGAAAAATTTTACTGCTCACTTTGTGGCAAAGAAAAACACGAAGTCGGCAAATTAAT
CGCCGGTGTATCCGGTTATATTTGCAATGAATGTGTGGAAACTTGCCACGATTTATTAATGGAAGAAGCCAATAAACATC
AAAAAGAGCAAGAACAGGAAAAACCGCTTGAAAAATTGCCTACTCCTCACCAAATTCGCGCACATTTGGATGATTATGTC
ATTGGACAAGATCAAGCGAAAAAAATCCTTTCCGTTGCTGTTTATAACCATTACAAACGTTTACGCAACAATGAAACCGA
TCTTGATGTTGAATTAGGCAAAAGTAACATTTTGCTTATCGGTCCGACCGGAAGCGGGAAAACATTATTGGCACAAACAT
TAGCTCGCCAAATTAATGTGCCTTTCGCCATTGCCGATGCAACTACGTTGACTGAAGCCGGTTATGTCGGTGAAGATGTG
GAAAATATTATCCAGCGGCTATTGCAAAATTGTGATTACGATACGGAAAAAGCGGAACAGGGTATTATTTATATTGATGA
AATCGATAAAATTACTCGTAAATCTGAAAATCCTTCCATTACCCGCGATGTTTCCGGTGAAGGTGTGCAACAAGCGTTAT
TAAAACTGATTGAAGGCACTATTGCCTCCGTTCCGCCTCAAGGCGGACGCAAACACCCACAGCAAGAGTTTTTGAAAGTG
GATACCTCAAAAATTCTGTTTATTTGTGGCGGTGCATTCTCTGGTTTGGATAAAATCATTGAAAAACGCACCCACAAAGA
TCGTGGAATCGGTTTTAATGCCAATGTACAAAGCAAAGAGAAAGAGCACGATATCGGTGAATTGTTCGCGCAAGTCGAAA
CTGAAGATTTAATTAAATTCGGTTTAATTCCTGAATTTGTCGGTCGTTTGCCGGTTGTAGCCTCATTGGCTGAATTGGAC
GAAGAAGCATTAATTCGCATTTTAACCGTGCCGAAAAATGCCTTAATCAAACAATATCAAGCGCTATTTACATTGGAAAA
TGTGGAGTTGGAATTCACTCCGGAAGCATTAACCGCCATTGCTAAAAAAGCACTGGCACGTAAAACCGGTGCTAGAGGAT
TACGTTCTATTGTCGAAGGCGTGCTGCTCGATACAATGTACGATCTTCCTTCTTTAGAGGGATTAAAGAAAGTCGTTGTA
GATCAGGATGTTATCGATAATCAAGCCCTTCCGAAATTAGAATACTAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-47)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-393)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

3D structure

• AlphaFold DB: A0AB36DXJ3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	57.212	100	0.573
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.025	95.904	0.528