Detailed information NTG0625720

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: NY025_RS18125
• Genome accession: NZ_CP103852
• Coordinates: 2235555..2236208 (-)
• Length: 217 a.a.
• NCBI ID: WP_003267806.1
• Uniprot ID: Q8XYP7
• Organism: Ralstonia pseudosolanacearum strain LMG 9673
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2230555..2241208

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NY025_RS18095 (NY025_18095)	-	2230635..2230805 (+)	171	WP_158491008.1	hypothetical protein	-
NY025_RS18110 (NY025_18110)	-	2231077..2231349 (-)	273	WP_020748517.1	HU family DNA-binding protein	-
NY025_RS18115 (NY025_18115)	lon	2231524..2233944 (-)	2421	WP_193025435.1	endopeptidase La	-
NY025_RS18120 (NY025_18120)	clpX	2234115..2235389 (-)	1275	WP_020748515.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
NY025_RS18125 (NY025_18125)	clpP	2235555..2236208 (-)	654	WP_003267806.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
NY025_RS18130 (NY025_18130)	tig	2236238..2237587 (-)	1350	WP_193034501.1	trigger factor	-
NY025_RS18135 (NY025_18135)	mnmC	2237821..2239830 (-)	2010	WP_193025431.1	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	-
NY025_RS18140 (NY025_18140)	-	2240073..2240267 (-)	195	WP_193025429.1	hypothetical protein	-

Sequence

Protein

• Length: 217 a.a.
• Molecular weight: 23756.26 Da
• Isoelectric Point: 5.1001

>NTDB_id=625720 NY025_RS18125 WP_003267806.1 2235555..2236208(-) (clpP) [Ralstonia pseudosolanacearum strain LMG 9673]
MIRNELIDQLARTQASALETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLESENPDK
DISLYINSPGGSVSAGLAMYDTMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRYALPNSRIMIHQPLGGARGQASDIEI
QAREILYLRERLNTILSEVTGQPVDKIARDTDRDNFMSGDQAKEYGLIDKVLARRGA

Nucleotide

• Length: 654 bp

>NTDB_id=625720 NY025_RS18125 WP_003267806.1 2235555..2236208(-) (clpP) [Ralstonia pseudosolanacearum strain LMG 9673]
ATGATCCGCAATGAACTGATCGACCAACTCGCCCGCACCCAGGCTTCCGCGCTCGAAACGCAGGGGCTCGGACTGGTGCC
GATGGTGGTCGAGCAGTCGGGCCGCGGCGAACGCGCCTACGACATCTACTCGCGCCTGCTGAAGGAGCGCGTGATTTTCA
TGGTGGGCGAGGTCAACGACCAGACTGCCAATCTCGTGGTGGCGCAGTTGCTGTTCCTGGAAAGCGAGAACCCGGACAAG
GACATCTCGCTGTACATCAACTCGCCGGGCGGTTCGGTGTCGGCGGGCCTGGCGATGTACGACACGATGCAGTTCGTCAA
GCCCGACGTGTCCACGCTGTGCATGGGCATGGCCGCCAGCATGGGCGCGTTCCTGCTGGCCGCCGGCGCGAAGGGCAAGC
GCTATGCGCTGCCGAACTCGCGGATCATGATCCACCAGCCGCTGGGCGGTGCGCGCGGTCAGGCCTCGGACATCGAGATC
CAGGCGCGTGAAATCCTGTACCTGCGCGAACGTCTGAACACGATCCTGTCCGAAGTCACCGGCCAGCCCGTGGACAAGAT
CGCCCGCGATACGGACCGCGACAATTTCATGAGCGGCGACCAGGCCAAGGAGTACGGTCTGATCGACAAGGTGCTGGCTC
GGCGGGGTGCCTGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (35-214)

3D structure

• AlphaFold DB: Q8XYP7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.708	88.479	0.599
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.368	87.558	0.59
clpP	Streptococcus pneumoniae Rx1	53.368	88.94	0.475
clpP	Streptococcus pneumoniae D39	53.368	88.94	0.475
clpP	Streptococcus pneumoniae R6	53.368	88.94	0.475
clpP	Streptococcus pneumoniae TIGR4	53.368	88.94	0.475
clpP	Lactococcus lactis subsp. cremoris KW2	53.684	87.558	0.47
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	52.105	87.558	0.456
clpP	Streptococcus thermophilus LMG 18311	51.295	88.94	0.456
clpP	Streptococcus thermophilus LMD-9	51.295	88.94	0.456
clpP	Streptococcus mutans UA159	51.309	88.018	0.452
clpP	Streptococcus pyogenes JRS4	51.579	87.558	0.452
clpP	Streptococcus pyogenes MGAS315	51.579	87.558	0.452