Detailed information NTG0625719

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: NY025_RS18120
• Genome accession: NZ_CP103852
• Coordinates: 2234115..2235389 (-)
• Length: 424 a.a.
• NCBI ID: WP_020748515.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain LMG 9673
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2229115..2240389

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NY025_RS18095 (NY025_18095)	-	2230635..2230805 (+)	171	WP_158491008.1	hypothetical protein	-
NY025_RS18110 (NY025_18110)	-	2231077..2231349 (-)	273	WP_020748517.1	HU family DNA-binding protein	-
NY025_RS18115 (NY025_18115)	lon	2231524..2233944 (-)	2421	WP_193025435.1	endopeptidase La	-
NY025_RS18120 (NY025_18120)	clpX	2234115..2235389 (-)	1275	WP_020748515.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
NY025_RS18125 (NY025_18125)	clpP	2235555..2236208 (-)	654	WP_003267806.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
NY025_RS18130 (NY025_18130)	tig	2236238..2237587 (-)	1350	WP_193034501.1	trigger factor	-
NY025_RS18135 (NY025_18135)	mnmC	2237821..2239830 (-)	2010	WP_193025431.1	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	-
NY025_RS18140 (NY025_18140)	-	2240073..2240267 (-)	195	WP_193025429.1	hypothetical protein	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 46360.55 Da
• Isoelectric Point: 5.5599

>NTDB_id=625719 NY025_RS18120 WP_020748515.1 2234115..2235389(-) (clpX) [Ralstonia pseudosolanacearum strain LMG 9673]
MADKKGSTGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNEIIRDEAAISEKEGGLAVKSDLPTPHEIRQSLDQY
VIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGED
VENIIQKLLQNCNYEVDKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQ
VDTTNILFICGGAFDGLEKIITQRSDKSGIGFGAEVKSKEERDVNEVLPQVEPEDLIKFGLIPELIGRLPVVATLAKLDE
AALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSALTAIALKAIKRKTGARGLRSIVEHALMDVMYDLPNHKGVQKVVID
ESTIAGDGKPLLMYEEQPKVAGSN

Nucleotide

• Length: 1275 bp

>NTDB_id=625719 NY025_RS18120 WP_020748515.1 2234115..2235389(-) (clpX) [Ralstonia pseudosolanacearum strain LMG 9673]
ATGGCGGACAAGAAAGGCTCGACTGGCGAAAAGCTGCTGTACTGCTCGTTCTGCGGCAAGAGCCAGCATGAAGTCAAGAA
ACTGATTGCCGGCCCCTCGGTCTTCATCTGCGATGAATGTATCGACCTGTGCAATGAAATCATCCGGGACGAGGCCGCGA
TCTCCGAGAAGGAGGGTGGGCTGGCGGTCAAATCCGACCTGCCGACCCCGCACGAGATTCGCCAGAGCCTGGATCAATAC
GTGATCGGTCAGGAGCAGGCCAAGAAGATCCTGGCGGTTGCGGTCTATAACCATTACAAGCGCTTGAAGCATCTCGGCAA
GAAGGATGACGTCGAGCTGTCCAAGAGCAACATCCTGCTCATCGGGCCGACCGGCTCGGGCAAGACGCTGCTGGCGCAGA
CGCTGGCTCGGCTGCTGAACGTGCCCTTCGTCATCGCCGACGCCACCACGCTGACCGAAGCCGGCTACGTGGGCGAGGAT
GTCGAGAACATCATCCAGAAGCTGCTGCAGAACTGCAATTACGAGGTCGACAAGGCACAGCGTGGCATTGTCTACATCGA
TGAGATCGACAAGATCTCTCGCAAGTCCGACAACCCGTCCATCACCCGAGACGTTTCCGGGGAAGGCGTGCAGCAGGCCC
TGCTGAAGCTGATCGAAGGGACGATGGCCTCGGTGCCGCCGCAGGGTGGGCGCAAGCATCCGAACCAGGATTTCCTCCAG
GTCGACACCACCAATATCCTGTTCATCTGCGGCGGTGCGTTCGATGGTCTCGAGAAGATCATTACGCAGCGCTCGGACAA
GTCCGGCATCGGCTTCGGCGCCGAGGTCAAGAGCAAGGAAGAGCGGGACGTCAACGAAGTGCTGCCGCAGGTGGAGCCGG
AAGACCTGATCAAGTTCGGCCTGATTCCCGAACTGATCGGCCGCCTGCCCGTGGTGGCGACGCTGGCCAAGTTGGACGAG
GCCGCGTTGATGGAGATCCTGGTCGAGCCGAAGAATGCAATCGTCAAGCAGTATCAGAAACTGCTGGCCATGGAAGGGGT
GGAGCTGGAAATCCGTCCGAGCGCGCTGACGGCGATTGCCCTCAAGGCAATCAAGCGCAAGACGGGTGCGCGCGGATTGC
GCTCCATCGTCGAGCATGCGCTGATGGATGTGATGTACGACCTTCCCAACCACAAGGGTGTGCAGAAGGTGGTGATCGAC
GAGAGCACGATCGCCGGCGACGGCAAGCCCTTGCTGATGTACGAAGAGCAACCCAAGGTTGCAGGTTCCAACTGA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (13-49)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-393)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	60.688	95.991	0.583
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.342	95.047	0.517