Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VIBNI_RS00875 Genome accession   NC_022528
Coordinates   173273..174505 (-) Length   410 a.a.
NCBI ID   WP_022549576.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 168273..179505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBNI_RS00835 (VIBNI_A0166) rimM 168287..168841 (+) 555 WP_022599632.1 ribosome maturation factor RimM -
  VIBNI_RS00840 (VIBNI_A0167) trmD 168869..169612 (+) 744 WP_022549571.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  VIBNI_RS00845 (VIBNI_A0168) rplS 169654..170007 (+) 354 WP_004408890.1 50S ribosomal protein L19 -
  VIBNI_RS00850 (VIBNI_A0169) mutT 170195..170596 (+) 402 WP_004408891.1 8-oxo-dGTP diphosphatase MutT -
  VIBNI_RS00855 (VIBNI_A0170) yacG 170683..170877 (-) 195 WP_022549572.1 DNA gyrase inhibitor YacG -
  VIBNI_RS00860 (VIBNI_A0171) zapD 170934..171674 (-) 741 WP_022549573.1 cell division protein ZapD -
  VIBNI_RS00865 (VIBNI_A0172) coaE 171708..172313 (-) 606 WP_022549574.1 dephospho-CoA kinase -
  VIBNI_RS00870 (VIBNI_A0173) pilD 172363..173232 (-) 870 WP_022549575.1 A24 family peptidase Machinery gene
  VIBNI_RS00875 (VIBNI_A0174) pilC 173273..174505 (-) 1233 WP_022549576.1 type II secretion system F family protein Machinery gene
  VIBNI_RS00880 (VIBNI_A0175) pilB 174515..176203 (-) 1689 WP_022549577.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VIBNI_RS00885 (VIBNI_A0176) pilA 176203..176661 (-) 459 WP_022601072.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  VIBNI_RS00890 (VIBNI_A0177) nadC 176939..177826 (-) 888 WP_022549579.1 carboxylating nicotinate-nucleotide diphosphorylase -
  VIBNI_RS00895 (VIBNI_A0178) ampD 177955..178512 (+) 558 WP_022549580.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45749.86 Da        Isoelectric Point: 10.3886

>NTDB_id=62563 VIBNI_RS00875 WP_022549576.1 173273..174505(-) (pilC) [Vibrio nigripulchritudo]
MEQSSSPKLKLHNFKWKGINSSGKKVSGQFLAFTEIEVRDKLRTQQIQIKKVRKSGISLLDKLSHKVKKKDIMVFTRQMA
TMLGTGVPIVQSLKMVSDNHNKAEMKSILSQISKAVEAGTPISKALSTSSSHFDNFYTDLIETGEQTGNLSEVFDRIATY
QEKSEQLRSKVIKAMIYPVMVILTAIGVSFLMLKFVIPEFEKMFSSFGAELPWFTQQVLKLSHIVQNDAWKMALALVVFT
VGFKLLRKRSFKFRLRSSRWGLKFPIVGGVFSKAAIAKFSRTLATSFNAGIPILNGLKTSAKTASNLHYQVAIEQVYKDT
AAGMPIYIAMRNTEAFPEMVLQMVMIGEESGSLDDMLNKVANVYEFEVDNTVDNLGKLLEPLIIVFLGVVIGGLVVSMYL
PVFNLMSVLG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=62563 VIBNI_RS00875 WP_022549576.1 173273..174505(-) (pilC) [Vibrio nigripulchritudo]
TTGGAACAGTCGTCCTCCCCAAAACTCAAGCTGCACAACTTTAAATGGAAGGGTATTAATAGCTCTGGTAAGAAAGTGTC
CGGGCAGTTTTTAGCTTTTACCGAAATTGAAGTAAGAGATAAACTTCGCACTCAACAAATTCAGATAAAAAAGGTCAGGA
AATCAGGAATTTCGCTACTGGATAAGCTCAGCCATAAAGTCAAAAAGAAAGACATTATGGTCTTCACTAGGCAGATGGCG
ACGATGTTGGGCACAGGTGTACCCATTGTGCAATCATTAAAAATGGTATCTGACAATCACAATAAAGCCGAGATGAAGTC
AATATTATCTCAAATATCCAAAGCGGTAGAGGCTGGCACTCCGATATCCAAGGCATTGAGTACATCTAGTAGCCATTTCG
ATAACTTTTATACAGACCTTATTGAAACAGGAGAACAGACGGGTAACCTTTCGGAAGTTTTTGACCGTATTGCCACCTAT
CAGGAAAAAAGTGAACAGCTTAGATCTAAGGTGATCAAAGCTATGATTTACCCTGTGATGGTTATCTTAACGGCTATTGG
GGTTTCATTCTTAATGCTTAAGTTCGTAATTCCAGAGTTTGAAAAGATGTTTTCAAGTTTTGGTGCTGAACTACCATGGT
TTACGCAGCAAGTCCTAAAACTCTCCCACATTGTCCAAAACGATGCCTGGAAGATGGCATTGGCACTGGTCGTTTTTACC
GTTGGCTTTAAACTATTAAGAAAGCGCTCTTTTAAATTCCGATTGAGGAGCTCTCGCTGGGGACTAAAATTTCCAATTGT
GGGGGGCGTATTTAGTAAGGCAGCCATCGCCAAATTTAGCCGGACACTGGCCACCAGTTTTAACGCAGGCATTCCTATAT
TGAATGGTTTAAAAACCAGTGCCAAAACAGCGAGTAATCTGCATTATCAAGTCGCCATTGAACAGGTTTATAAAGACACC
GCAGCCGGTATGCCCATATACATTGCCATGCGAAACACCGAAGCTTTCCCGGAAATGGTATTGCAAATGGTGATGATTGG
AGAAGAATCCGGTTCGCTCGATGACATGCTCAATAAAGTCGCCAACGTCTATGAGTTTGAAGTTGATAACACAGTCGATA
ACCTTGGGAAGTTGCTGGAACCTTTAATTATTGTTTTCCTTGGAGTGGTCATTGGTGGACTTGTCGTTTCTATGTACTTA
CCAGTATTTAACTTAATGAGTGTATTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

71.921

99.024

0.712
  pilC Vibrio campbellii strain DS40M4

68.642

98.78

0.678
  pilG Neisseria gonorrhoeae MS11

42.327

98.537

0.417
  pilG Neisseria meningitidis 44/76-A

41.728

98.78

0.412
  pilC Acinetobacter baumannii D1279779

42

97.561

0.41
  pilC Acinetobacter baylyi ADP1

42.317

96.829

0.41
  pilC Pseudomonas stutzeri DSM 10701

42.065

96.829

0.407
  pilC Legionella pneumophila strain ERS1305867

39.32

100

0.395

Multiple sequence alignment