Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LMK00_RS11205 Genome accession   NZ_CP086395
Coordinates   2259826..2260320 (-) Length   164 a.a.
NCBI ID   WP_017369521.1    Uniprot ID   A0A9Q9D6U2
Organism   Lactococcus formosensis strain I4/6O     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2254826..2265320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMK00_RS11170 (LMK00_11165) - 2255685..2256002 (-) 318 WP_086583212.1 hypothetical protein -
  LMK00_RS11175 (LMK00_11170) - 2256445..2256705 (-) 261 WP_086583211.1 hypothetical protein -
  LMK00_RS11180 (LMK00_11175) - 2256708..2257025 (-) 318 WP_086583210.1 hypothetical protein -
  LMK00_RS11185 (LMK00_11180) - 2256997..2258232 (-) 1236 WP_086583209.1 hypothetical protein -
  LMK00_RS11190 (LMK00_11185) - 2258229..2258648 (-) 420 WP_252170078.1 hypothetical protein -
  LMK00_RS11195 (LMK00_11190) - 2258692..2258982 (-) 291 WP_086583207.1 WXG100 family type VII secretion target -
  LMK00_RS11200 (LMK00_11195) rpsR 2259461..2259706 (-) 246 WP_003133134.1 30S ribosomal protein S18 -
  LMK00_RS11205 (LMK00_11200) ssb 2259826..2260320 (-) 495 WP_017369521.1 single-stranded DNA-binding protein Machinery gene
  LMK00_RS11210 (LMK00_11205) rpsF 2260358..2260651 (-) 294 WP_003133129.1 30S ribosomal protein S6 -
  LMK00_RS11215 (LMK00_11210) - 2260837..2261049 (-) 213 WP_016171080.1 hypothetical protein -
  LMK00_RS11220 (LMK00_11215) - 2261524..2262987 (+) 1464 WP_213432840.1 amino acid permease -
  LMK00_RS11225 (LMK00_11220) dnaX 2263014..2264678 (-) 1665 WP_252175463.1 DNA polymerase III subunit gamma/tau -
  LMK00_RS11230 (LMK00_11225) - 2264691..2265311 (-) 621 WP_017369524.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18019.88 Da        Isoelectric Point: 4.9533

>NTDB_id=624763 LMK00_RS11205 WP_017369521.1 2259826..2260320(-) (ssb) [Lactococcus formosensis strain I4/6O]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQQQQSQNRPFAGSNSSAGNSTPDFGRDADPFGGSPMEISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=624763 LMK00_RS11205 WP_017369521.1 2259826..2260320(-) (ssb) [Lactococcus formosensis strain I4/6O]
ATGATTAATAATGTTGTTTTGGTTGGACGCGTTGTGCGTGACCCTGAACTGCGATACACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAGCGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGCCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTAACAGGTAGTATTCAAGTGCGA
AATTATGAGAACAAAGAAGGTCAACGTGTTTACGTGACCGAGGTATTGGCTGATAACTTCCAAATGCTTGAAAGTCGTGC
TGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGCAACAACAATCACAAAATCGTCCTTTTGCTGGCTCTAACA
GCTCAGCAGGCAATTCAACACCTGATTTTGGTCGTGATGCAGATCCGTTTGGTGGCTCGCCAATGGAAATTTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.591
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.494

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.242

80.488

0.396
  ssbB/cilA Streptococcus pneumoniae D39

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae R6

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis SK321

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae Rx1

48.485

80.488

0.39
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372