Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   LNP58_RS02280 Genome accession   NZ_CP086372
Coordinates   487764..488894 (-) Length   376 a.a.
NCBI ID   WP_011407963.1    Uniprot ID   A0A0K0GNA2
Organism   Xanthomonas oryzae pv. oryzae strain GXO2001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 482764..493894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNP58_RS02245 (LNP58_02245) ruvX 483327..483794 (-) 468 WP_011407969.1 Holliday junction resolvase RuvX -
  LNP58_RS02250 (LNP58_02250) - 483787..484353 (-) 567 WP_011258225.1 YqgE/AlgH family protein -
  LNP58_RS02255 (LNP58_02255) - 484429..485625 (+) 1197 Protein_441 hypothetical protein -
  LNP58_RS02260 (LNP58_02260) - 485622..486194 (+) 573 WP_011407966.1 DNA-3-methyladenine glycosylase I -
  LNP58_RS23460 - 486231..486483 (+) 253 Protein_443 DUF72 domain-containing protein -
  LNP58_RS02275 (LNP58_02275) - 486818..487492 (-) 675 WP_027703695.1 YitT family protein -
  LNP58_RS02280 (LNP58_02280) pilU 487764..488894 (-) 1131 WP_011407963.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LNP58_RS02285 (LNP58_02285) pilT 489008..490045 (-) 1038 WP_011258220.1 type IV pilus twitching motility protein PilT Machinery gene
  LNP58_RS02290 (LNP58_02290) - 490409..491101 (+) 693 WP_011407962.1 YggS family pyridoxal phosphate-dependent enzyme -
  LNP58_RS02295 (LNP58_02295) proC 491145..492005 (+) 861 WP_011407961.1 pyrroline-5-carboxylate reductase -
  LNP58_RS02300 (LNP58_02300) - 492076..493395 (+) 1320 Protein_449 IS701-like element ISXo15 family transposase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41968.23 Da        Isoelectric Point: 7.1973

>NTDB_id=624584 LNP58_RS02280 WP_011407963.1 487764..488894(-) (pilU) [Xanthomonas oryzae pv. oryzae strain GXO2001]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAIKVNGKISPITQTPLTAQQSRDLVLNVMTPSQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVDELSLSPVIKTLAMTKRGIVIFVGATGAGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAM
DRIINFFPKDRRNQLLMDLSLNLKGVVAQQLIPTPDGRSRRVAMEIMLGTPLVQDYIRDGEIHKLKEIMKESTNLGMRTF
DQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDAKTLSQGMDGVEISEVR

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=624584 LNP58_RS02280 WP_011407963.1 487764..488894(-) (pilU) [Xanthomonas oryzae pv. oryzae strain GXO2001]
ATGAGCACCATCGACTTCACCTCCTTCCTCAAGCTGATGGCGCATCAGAAGGCGTCGGACCTGTTCATCACCTCGGGGAT
GCCGCCGGCGATCAAGGTGAATGGCAAGATCAGCCCGATTACCCAGACGCCGCTGACTGCGCAGCAGAGCCGCGATCTGG
TGTTGAACGTGATGACTCCCTCGCAGCGCGAGGAATTCGAAAAGACCCACGAGTGCAACTTCGCCATCGGCGTTTCAGGG
GTGGGGCGTTTTCGTGTGAGCTGTTTCTACCAGCGTAATCAGGTCGGTATGGTGCTGCGCCGGATCGAAACGCGCATCCC
CACCGTGGACGAGCTGAGCCTGTCTCCGGTGATCAAGACGCTGGCGATGACCAAGCGCGGCATCGTCATCTTCGTCGGCG
CCACCGGTGCCGGTAAGTCGACCTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAATTCCACCGGCCACATCATCACC
ATCGAAGACCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGATACCGACAG
CTGGGAAAACGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGTACCCGCGAGGGCA
TGGACCACGCGATCGCCTTCGCCGAAACCGGCCACCTGGTGCTGTGCACGCTGCACGCCAACAACGCCAATCAGGCGATG
GACCGCATCATCAACTTCTTCCCCAAAGACCGCCGCAATCAGCTGCTGATGGACCTGTCGCTCAATCTCAAGGGCGTGGT
GGCGCAGCAGCTGATTCCGACGCCGGATGGCCGCAGCCGTCGCGTGGCGATGGAAATCATGTTGGGCACGCCGCTGGTGC
AGGACTACATCCGCGACGGCGAAATCCACAAGCTCAAGGAGATCATGAAGGAGTCCACCAACTTGGGCATGCGCACCTTC
GACCAGAGCCTGTTCGAGCTCTACCAGGCTGGCGAAATCAGCTACGAAGACGCATTGCGCTACGCCGACTCGCAGAACGA
AGTGCGCTTGCGCATCAAGCTCTCGCAGGGGGGCGATGCCAAGACCTTGTCGCAGGGCATGGATGGTGTGGAGATTTCCG
AAGTTCGATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(83-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K0GNA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

66.757

97.606

0.652
  pilU Acinetobacter baylyi ADP1

63.866

94.947

0.606
  pilU Vibrio cholerae strain A1552

53.371

94.681

0.505
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.457

94.947

0.394
  pilT Acinetobacter baumannii strain A118

40.116

91.489

0.367
  pilT Acinetobacter nosocomialis M2

40.116

91.489

0.367
  pilT Acinetobacter baumannii D1279779

40.116

91.489

0.367
  pilT Pseudomonas aeruginosa PAK

40.896

89.096

0.364