Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LMD38_RS08220 Genome accession   NZ_CP086328
Coordinates   1561806..1563044 (+) Length   412 a.a.
NCBI ID   WP_062822534.1    Uniprot ID   -
Organism   Bacillus pacificus strain anQ-h4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1556806..1568044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMD38_RS08190 (LMD38_08190) yfmH 1556856..1558142 (+) 1287 WP_016718297.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LMD38_RS08195 (LMD38_08195) ymfI 1558246..1558959 (+) 714 WP_000759611.1 elongation factor P 5-aminopentanone reductase -
  LMD38_RS08200 (LMD38_08200) - 1559035..1559283 (+) 249 WP_000114454.1 DUF3243 domain-containing protein -
  LMD38_RS08205 (LMD38_08205) - 1559424..1560209 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  LMD38_RS08210 (LMD38_08210) - 1560231..1561142 (+) 912 WP_000137481.1 helix-turn-helix domain-containing protein -
  LMD38_RS08215 (LMD38_08215) pgsA 1561206..1561784 (+) 579 WP_016718296.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LMD38_RS08220 (LMD38_08220) cinA 1561806..1563044 (+) 1239 WP_062822534.1 competence/damage-inducible protein CinA Machinery gene
  LMD38_RS08225 (LMD38_08225) recA 1563189..1563797 (+) 609 Protein_1620 recombinase RecA -
  LMD38_RS08230 (LMD38_08230) - 1564125..1564547 (+) 423 Protein_1621 recombinase RecA -
  LMD38_RS08235 (LMD38_08235) rny 1565033..1566595 (+) 1563 WP_000099774.1 ribonuclease Y -
  LMD38_RS08240 (LMD38_08240) - 1566760..1567554 (+) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  LMD38_RS08245 (LMD38_08245) spoVS 1567703..1567963 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45436.70 Da        Isoelectric Point: 5.0249

>NTDB_id=624306 LMD38_RS08220 WP_062822534.1 1561806..1563044(+) (cinA) [Bacillus pacificus strain anQ-h4]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDENALALISDYFKRTGREFTENNKKQALVLNGANVFVNDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=624306 LMD38_RS08220 WP_062822534.1 1561806..1563044(+) (cinA) [Bacillus pacificus strain anQ-h4]
ATGAACGCTGAAATTATTGCGGTTGGAACAGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAGCGTGCGGACATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGGGGAAGAGCTTGTATATGACGAAAATGCATTAGCATTAATAAGCGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTGAATGGGGCAAATGTATTTGTAAATGATCACGGTATGG
CACCTGGTATGGGGTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAGATGAAGCCAATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTCTTCGGAAT
TGGAGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATTGCCCCGCTTGCCAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAGTTTTTCTACGGGTATGACCAAGAGTTTCTGCATTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TATCTTCCGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTATTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACTGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.738

100

0.587
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.255

100

0.481
  cinA Streptococcus pneumoniae Rx1

46.778

100

0.476
  cinA Streptococcus pneumoniae R6

46.778

100

0.476
  cinA Streptococcus pneumoniae D39

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.539

100

0.473
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

41.534

91.748

0.381