Detailed information NTG0623437

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: LL920_RS18175
• Genome accession: NZ_CP086185
• Coordinates: 3864063..3865322 (-)
• Length: 419 a.a.
• NCBI ID: WP_011408067.1
• Uniprot ID: A0A0K0GIM7
• Organism: Xanthomonas oryzae strain PXO112
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3855019..3878894	3864063..3865322	within	0

Gene organization within MGE regions

Location: 3855019..3878894

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL920_RS18150 (LL920_18110)	-	3858801..3859289 (+)	489	WP_178380552.1	DUF6714 family protein	-
LL920_RS18155 (LL920_18115)	-	3859341..3860308 (+)	968	WP_011258802.1	IS5-like element ISXo1 family transposase	-
LL920_RS23955	-	3860625..3861119 (+)	495	WP_369333327.1	DUF6714 family protein	-
LL920_RS18160 (LL920_18120)	-	3861186..3862500 (-)	1315	Protein_3480	IS701 family transposase	-
LL920_RS18165 (LL920_18125)	coaE	3862571..3863179 (-)	609	WP_011258357.1	dephospho-CoA kinase	-
LL920_RS18170 (LL920_18130)	-	3863193..3864056 (-)	864	WP_011258358.1	A24 family peptidase	-
LL920_RS18175 (LL920_18135)	pilC	3864063..3865322 (-)	1260	WP_011408067.1	type II secretion system F family protein	Machinery gene
LL920_RS18180 (LL920_18140)	pilA2	3865677..3866102 (+)	426	WP_011408068.1	pilin	Machinery gene
LL920_RS18185 (LL920_18145)	-	3866237..3867826 (+)	1590	WP_011408069.1	phosphoethanolamine transferase	-
LL920_RS18190 (LL920_18150)	-	3867837..3868466 (+)	630	WP_011408070.1	hypothetical protein	-
LL920_RS18195 (LL920_18155)	-	3868436..3869962 (+)	1527	WP_011258362.1	membrane protein	-
LL920_RS18200 (LL920_18160)	pilB	3869997..3871730 (+)	1734	WP_011408072.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LL920_RS23895 (LL920_18165)	-	3871739..3871963 (-)	225	WP_325167351.1	cell filamentation protein Fic	-
LL920_RS18210 (LL920_18170)	-	3872087..3872248 (-)	162	WP_153296778.1	hypothetical protein	-
LL920_RS18215 (LL920_18175)	-	3872310..3872516 (-)	207	WP_027703281.1	YhfG family protein	-
LL920_RS18220 (LL920_18180)	pilR	3872589..3874040 (-)	1452	WP_171970756.1	sigma-54 dependent transcriptional regulator	Regulator
LL920_RS18225 (LL920_18185)	-	3874311..3875924 (-)	1614	WP_011258366.1	PAS domain-containing sensor histidine kinase	-
LL920_RS18230 (LL920_18190)	sucC	3876158..3877327 (+)	1170	WP_011258367.1	ADP-forming succinate--CoA ligase subunit beta	-
LL920_RS18235 (LL920_18195)	sucD	3877352..3878227 (+)	876	WP_011258368.1	succinate--CoA ligase subunit alpha	-
LL920_RS18240 (LL920_18200)	-	3878400..3878894 (+)	495	WP_044756974.1	hypothetical protein	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 46058.56 Da
• Isoelectric Point: 10.2301

>NTDB_id=623437 LL920_RS18175 WP_011408067.1 3864063..3865322(-) (pilC) [Xanthomonas oryzae strain PXO112]
MSVARSAIKKQPVDRNTSMLQTFIWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGGAGKKITPKE
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLIVTVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1260 bp

>NTDB_id=623437 LL920_RS18175 WP_011408067.1 3864063..3865322(-) (pilC) [Xanthomonas oryzae strain PXO112]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACCAGCATGCTGCAGACCTTCATTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGTTCGGAGGGGCGGGGAAGAAAATTACCCCTAAAGAA
ATTGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAAAAAAATGGTCGGCCAGATCAGGACAGATATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAGCTCTACCGCAACCTCGTCCGCGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGAAACGGTCGCTACCTACAAAGAAAACATTGAAGCTCTGAAGGGCAAGATCAAAAAGGCACTGTTCTACCC
TGCCATGGTGGTTGCAGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAGGAAGTATTCA
AGAGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGATAGTGACAGTTGGATCTGTCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGGACTTGA
TCGATTGATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTTGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAAGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTGAACCTATTTCCACA
TATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCACTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGGAGGAGGTCAATAATGCCGTGGATGCACTCAGCAGCCTGCTCGAGCCACTGATCATGGTCTTCATCGGCACGATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

3D structure

• AlphaFold DB: A0A0K0GIM7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	53.202	96.897	0.516
pilC	Pseudomonas stutzeri DSM 10701	53.283	94.511	0.504
pilC	Acinetobacter baylyi ADP1	50.37	96.659	0.487
pilC	Acinetobacter baumannii D1279779	50.37	96.659	0.487
pilG	Neisseria gonorrhoeae MS11	43.921	96.181	0.422
pilG	Neisseria meningitidis 44/76-A	43.424	96.181	0.418
pilC	Vibrio cholerae strain A1552	40.75	95.465	0.389
pilC	Vibrio campbellii strain DS40M4	39	95.465	0.372