Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LL920_RS18220 Genome accession   NZ_CP086185
Coordinates   3872589..3874040 (-) Length   483 a.a.
NCBI ID   WP_171970756.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain PXO112     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3855019..3878894 3872589..3874040 within 0


Gene organization within MGE regions


Location: 3855019..3878894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL920_RS18150 (LL920_18110) - 3858801..3859289 (+) 489 WP_178380552.1 DUF6714 family protein -
  LL920_RS18155 (LL920_18115) - 3859341..3860308 (+) 968 WP_011258802.1 IS5-like element ISXo1 family transposase -
  LL920_RS23955 - 3860625..3861119 (+) 495 WP_369333327.1 DUF6714 family protein -
  LL920_RS18160 (LL920_18120) - 3861186..3862500 (-) 1315 Protein_3480 IS701 family transposase -
  LL920_RS18165 (LL920_18125) coaE 3862571..3863179 (-) 609 WP_011258357.1 dephospho-CoA kinase -
  LL920_RS18170 (LL920_18130) - 3863193..3864056 (-) 864 WP_011258358.1 A24 family peptidase -
  LL920_RS18175 (LL920_18135) pilC 3864063..3865322 (-) 1260 WP_011408067.1 type II secretion system F family protein Machinery gene
  LL920_RS18180 (LL920_18140) pilA2 3865677..3866102 (+) 426 WP_011408068.1 pilin Machinery gene
  LL920_RS18185 (LL920_18145) - 3866237..3867826 (+) 1590 WP_011408069.1 phosphoethanolamine transferase -
  LL920_RS18190 (LL920_18150) - 3867837..3868466 (+) 630 WP_011408070.1 hypothetical protein -
  LL920_RS18195 (LL920_18155) - 3868436..3869962 (+) 1527 WP_011258362.1 membrane protein -
  LL920_RS18200 (LL920_18160) pilB 3869997..3871730 (+) 1734 WP_011408072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LL920_RS23895 (LL920_18165) - 3871739..3871963 (-) 225 WP_325167351.1 cell filamentation protein Fic -
  LL920_RS18210 (LL920_18170) - 3872087..3872248 (-) 162 WP_153296778.1 hypothetical protein -
  LL920_RS18215 (LL920_18175) - 3872310..3872516 (-) 207 WP_027703281.1 YhfG family protein -
  LL920_RS18220 (LL920_18180) pilR 3872589..3874040 (-) 1452 WP_171970756.1 sigma-54 dependent transcriptional regulator Regulator
  LL920_RS18225 (LL920_18185) - 3874311..3875924 (-) 1614 WP_011258366.1 PAS domain-containing sensor histidine kinase -
  LL920_RS18230 (LL920_18190) sucC 3876158..3877327 (+) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  LL920_RS18235 (LL920_18195) sucD 3877352..3878227 (+) 876 WP_011258368.1 succinate--CoA ligase subunit alpha -
  LL920_RS18240 (LL920_18200) - 3878400..3878894 (+) 495 WP_044756974.1 hypothetical protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52446.18 Da        Isoelectric Point: 6.8290

>NTDB_id=623440 LL920_RS18220 WP_171970756.1 3872589..3874040(-) (pilR) [Xanthomonas oryzae strain PXO112]
MRRAPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=623440 LL920_RS18220 WP_171970756.1 3872589..3874040(-) (pilR) [Xanthomonas oryzae strain PXO112]
TTGCGCCGCGCCCCACTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCTGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGATCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTCC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

95.652

0.602
  pilR Acinetobacter baumannii strain A118

48.268

95.652

0.462