Detailed information NTG0623436

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: LL920_RS17345
• Genome accession: NZ_CP086185
• Coordinates: 3691936..3693066 (+)
• Length: 376 a.a.
• NCBI ID: WP_044757021.1
• Uniprot ID: -
• Organism: Xanthomonas oryzae strain PXO112
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	3694035..3695128	3691936..3693066	flank	969

Gene organization within MGE regions

Location: 3691936..3695128

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL920_RS17345 (LL920_17305)	pilU	3691936..3693066 (+)	1131	WP_044757021.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
LL920_RS17350 (LL920_17310)	-	3693338..3693649 (+)	312	Protein_3324	YitT family protein	-
LL920_RS17355 (LL920_17315)	-	3693740..3694694 (+)	955	Protein_3325	IS30-like element IS1112b family transposase	-
LL920_RS17360 (LL920_17320)	-	3694694..3695128 (+)	435	Protein_3326	transposase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41978.26 Da
• Isoelectric Point: 7.1973

>NTDB_id=623436 LL920_RS17345 WP_044757021.1 3691936..3693066(+) (pilU) [Xanthomonas oryzae strain PXO112]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAIKVNGKISPITQTPLTAQQSRDLVLNVMTPSQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVDELSLPPVIKTLAMTKRGIVIFVGATGAGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAM
DRIINFFPKDRRNQLLMDLSLNLKGVVAQQLIPTPDGRSRRVAMEIMLGTPLVQDYIRDGEIHKLKEIMKESTNLGMRTF
DQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDAKTLSQGMDGVEISEVR

Nucleotide

• Length: 1131 bp

>NTDB_id=623436 LL920_RS17345 WP_044757021.1 3691936..3693066(+) (pilU) [Xanthomonas oryzae strain PXO112]
ATGAGCACCATCGACTTCACCTCCTTCCTCAAGCTGATGGCGCATCAGAAGGCGTCGGACCTGTTCATCACCTCGGGGAT
GCCGCCGGCGATCAAGGTGAATGGCAAGATCAGCCCGATTACCCAGACGCCGCTGACTGCGCAGCAGAGCCGCGATCTGG
TGTTGAACGTGATGACTCCCTCGCAGCGCGAGGAATTCGAAAAGACCCACGAGTGCAACTTCGCCATCGGCGTTTCAGGG
GTGGGGCGTTTTCGTGTGAGCTGTTTCTACCAGCGTAATCAGGTCGGTATGGTGCTGCGCCGGATCGAAACGCGCATCCC
CACCGTGGACGAGCTGAGCCTGCCTCCGGTGATCAAGACGCTGGCGATGACCAAGCGCGGCATCGTCATCTTCGTCGGCG
CCACCGGTGCCGGTAAGTCGACCTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAATTCCACCGGCCACATCATCACC
ATCGAAGACCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGATACCGACAG
CTGGGAAAACGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGTACCCGCGAGGGCA
TGGACCACGCGATCGCCTTCGCCGAAACCGGCCACCTGGTGCTGTGCACGCTGCACGCCAACAACGCCAATCAGGCGATG
GACCGCATCATCAACTTCTTCCCCAAAGACCGCCGCAATCAGCTGCTGATGGACCTGTCGCTCAATCTCAAGGGCGTGGT
GGCGCAGCAGCTGATTCCGACGCCGGATGGCCGCAGCCGTCGCGTGGCGATGGAAATCATGTTGGGCACGCCGCTGGTGC
AGGACTACATCCGCGACGGCGAAATCCACAAGCTCAAGGAGATCATGAAGGAGTCCACCAACTTGGGCATGCGCACCTTC
GACCAGAGCCTGTTCGAGCTCTACCAGGCTGGCGAAATCAGCTACGAAGACGCATTGCGCTACGCCGACTCGCAGAACGA
AGTGCGCTTGCGCATCAAGCTCTCGCAGGGGGGCGATGCCAAGACCTTGTCGCAGGGCATGGATGGTGTGGAGATTTCCG
AAGTTCGATAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (108-272)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	67.03	97.606	0.654
pilU	Acinetobacter baylyi ADP1	64.146	94.947	0.609
pilU	Vibrio cholerae strain A1552	53.652	94.681	0.508
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.737	94.947	0.396
pilT	Acinetobacter nosocomialis M2	40.116	91.489	0.367
pilT	Acinetobacter baumannii D1279779	40.116	91.489	0.367
pilT	Acinetobacter baumannii strain A118	40.116	91.489	0.367
pilT	Pseudomonas aeruginosa PAK	40.896	89.096	0.364