Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LJC78_RS09325 Genome accession   NZ_CP086007
Coordinates   1771810..1773060 (+) Length   416 a.a.
NCBI ID   WP_003231847.1    Uniprot ID   A0A199WIX6
Organism   Bacillus subtilis subsp. natto strain SCP010-1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1766810..1778060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJC78_RS09295 (LJC78_09295) yfmH 1766900..1768186 (+) 1287 WP_003244823.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LJC78_RS09300 (LJC78_09300) ymfI 1768241..1768969 (+) 729 WP_003244676.1 elongation factor P 5-aminopentanone reductase -
  LJC78_RS09305 (LJC78_09305) ymfJ 1769050..1769307 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  LJC78_RS09310 (LJC78_09310) - 1769437..1770228 (+) 792 WP_003220998.1 DUF3388 domain-containing protein -
  LJC78_RS09315 (LJC78_09315) rodZ 1770247..1771161 (+) 915 WP_014479813.1 cell shape determination protein RodZ -
  LJC78_RS09320 (LJC78_09320) pgsA 1771211..1771792 (+) 582 WP_014479814.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LJC78_RS09325 (LJC78_09325) cinA 1771810..1773060 (+) 1251 WP_003231847.1 competence/damage-inducible protein A Machinery gene
  LJC78_RS09330 (LJC78_09330) recA 1773233..1774279 (+) 1047 WP_003245789.1 recombinase RecA Machinery gene
  LJC78_RS09335 (LJC78_09335) pbpX 1774446..1775621 (+) 1176 WP_014479815.1 serine hydrolase domain-containing protein -
  LJC78_RS09340 (LJC78_09340) rny 1775897..1777459 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45537.85 Da        Isoelectric Point: 5.3737

>NTDB_id=621966 LJC78_RS09325 WP_003231847.1 1771810..1773060(+) (cinA) [Bacillus subtilis subsp. natto strain SCP010-1]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSIACKEKGITISAAESFTGGLFSEWLTDHSGASKLFAGGVVCYTNDVKQNVLG
VKKETLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=621966 LJC78_RS09325 WP_003231847.1 1771810..1773060(+) (cinA) [Bacillus subtilis subsp. natto strain SCP010-1]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGCTCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGAATGCTCACAGAGCATGAATCGCGCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACCGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCGCAAACCAATCCGACAATTG
CGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTATAGCGTGCAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGCTTTACCGGAGGGCTGTTTTCTGAATGGCTGA
CGGATCATAGCGGTGCCTCAAAATTATTTGCCGGGGGCGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTCAAGAAGGAAACATTAGATCGTTTTGGGGCGGTCAGCAAGGAGTGCGCATCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATCAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGCATTTCCGCAAATGGTAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGGATCAGAAAACGC
GGCGCTAAATACGGCTGCCATTTAATCTTAAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WIX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459
  cinA Streptococcus mitis SK321

45.694

100

0.459
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454
  cinA Streptococcus pneumoniae R6

45.215

100

0.454
  cinA Streptococcus pneumoniae D39

44.976

100

0.452
  cinA Streptococcus suis isolate S10

41.379

90.625

0.375