Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HP435_RS16500 Genome accession   NZ_CP085874
Coordinates   3605234..3606478 (-) Length   414 a.a.
NCBI ID   WP_122965254.1    Uniprot ID   -
Organism   Brevibacillus sp. HD3.3A     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3600234..3611478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP435_RS16485 (HP435_16530) - 3601647..3602294 (-) 648 WP_173598865.1 regulatory protein RecX -
  HP435_RS16490 (HP435_16535) recA 3602412..3603470 (-) 1059 WP_122965256.1 recombinase RecA Machinery gene
  HP435_RS16495 (HP435_16540) - 3603637..3605226 (-) 1590 WP_122965255.1 DEAD/DEAH box helicase -
  HP435_RS16500 (HP435_16545) cinA 3605234..3606478 (-) 1245 WP_122965254.1 competence/damage-inducible protein A Machinery gene
  HP435_RS16505 (HP435_16550) pgsA 3606587..3607162 (-) 576 WP_063227562.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HP435_RS16510 (HP435_16555) rimO 3607163..3608509 (-) 1347 WP_173596504.1 30S ribosomal protein S12 methylthiotransferase RimO -
  HP435_RS16515 (HP435_16560) - 3608629..3609534 (-) 906 WP_122965253.1 helix-turn-helix domain-containing protein -
  HP435_RS16520 (HP435_16565) - 3609547..3610326 (-) 780 WP_122965252.1 YmfK family protein -
  HP435_RS16525 (HP435_16570) - 3610440..3610709 (-) 270 WP_122965251.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44848.31 Da        Isoelectric Point: 4.9172

>NTDB_id=621019 HP435_RS16500 WP_122965254.1 3605234..3606478(-) (cinA) [Brevibacillus sp. HD3.3A]
MRAEIIAVGTELLLGQIANTNAQFLSQKLAEIGVGVYFHSVVGDNTQRLQQVIALAADRSDLVIFTGGLGPTQDDLTKET
VAGHVGVGLETNPEAMERIEQFFLQRGIVMTENNRKQALVLSGSHVFPNDFGMAPGMAIRHDSCTFVLLPGPPSELYPMV
EHYVMPYLTDLLPEKRVFHSHVLRFYGIGESALEERLLDLIEKQDNPTIAPYAKEFEVTLRITARASTAEEGEALILPVE
EEIRKRVGEYVYGMGEDSSLHDVLVSELKKRNETIACAESCTGGTIASLITSVPGSSSVFQGGIVCYTNDVKNQLLDVPE
EVLSTDGAVSRQTAQLLAENVRAKLGATYGVSVTGVAGPDPSEGKPVGLVYVGIAGEGMPTVVKELRLAGRRKAIVGRAA
KFALFYALQMQKER

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=621019 HP435_RS16500 WP_122965254.1 3605234..3606478(-) (cinA) [Brevibacillus sp. HD3.3A]
ATGAGAGCGGAGATTATCGCAGTAGGTACCGAGCTTTTGCTAGGCCAGATTGCCAACACCAATGCTCAGTTTCTCTCGCA
AAAACTGGCGGAAATTGGTGTCGGAGTGTATTTTCATTCCGTTGTCGGCGATAACACGCAGCGGTTGCAGCAGGTGATCG
CCCTCGCAGCCGACCGTTCCGATCTTGTCATTTTTACGGGTGGGCTTGGACCGACTCAGGATGACCTGACAAAAGAAACA
GTGGCAGGGCACGTGGGCGTCGGACTGGAGACAAATCCGGAAGCCATGGAAAGAATTGAACAATTCTTTTTGCAACGTGG
GATTGTCATGACGGAAAACAATCGGAAGCAGGCGCTGGTTCTCTCAGGCAGCCATGTCTTCCCCAATGACTTCGGGATGG
CGCCTGGGATGGCGATCCGTCATGACAGTTGCACGTTCGTGCTTCTCCCTGGACCGCCTAGCGAGCTGTACCCGATGGTG
GAGCATTACGTCATGCCGTACTTGACGGATCTGTTGCCGGAGAAGCGAGTATTTCATTCTCATGTGCTGCGCTTCTACGG
GATCGGTGAGTCTGCTCTGGAGGAGCGGTTGCTGGATCTGATTGAAAAACAGGACAACCCGACGATTGCTCCGTATGCAA
AAGAATTTGAAGTAACGCTGCGGATTACGGCGAGGGCCTCAACGGCAGAAGAAGGAGAAGCCTTGATTTTGCCGGTCGAG
GAGGAGATTCGCAAGCGCGTTGGCGAGTACGTGTACGGGATGGGGGAGGATTCTTCCCTGCACGATGTATTGGTAAGCGA
ACTGAAAAAGCGAAACGAGACCATCGCATGTGCAGAGAGCTGTACAGGCGGCACGATCGCTTCGCTCATTACTTCCGTTC
CTGGCAGTTCGTCTGTTTTCCAAGGAGGCATCGTTTGCTATACAAACGATGTGAAAAACCAGCTGCTCGACGTGCCTGAA
GAAGTGTTGTCCACAGACGGCGCAGTCAGCCGCCAGACAGCGCAGCTGCTTGCGGAGAATGTACGAGCCAAGCTGGGAGC
CACATACGGAGTTTCCGTGACGGGTGTGGCTGGTCCCGATCCATCGGAAGGCAAGCCTGTAGGTCTTGTCTACGTAGGGA
TTGCGGGTGAAGGGATGCCAACAGTAGTCAAAGAGCTTCGCCTTGCAGGCAGAAGAAAGGCGATTGTTGGGCGTGCCGCC
AAATTTGCGCTATTTTATGCGCTGCAAATGCAAAAAGAAAGGTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(259-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.847

99.758

0.507
  cinA Streptococcus mitis SK321

47.215

99.758

0.471
  cinA Streptococcus mitis NCTC 12261

47.215

99.758

0.471
  cinA Streptococcus pneumoniae TIGR4

46.731

99.758

0.466
  cinA Streptococcus pneumoniae Rx1

46.489

99.758

0.464
  cinA Streptococcus pneumoniae R6

46.489

99.758

0.464
  cinA Streptococcus pneumoniae D39

46.247

99.758

0.461
  cinA Streptococcus mutans UA159

44.612

96.377

0.43
  cinA Streptococcus suis isolate S10

39.747

95.411

0.379