Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M892_RS10775 Genome accession   NC_022269
Coordinates   2350926..2352035 (+) Length   369 a.a.
NCBI ID   WP_012126635.1    Uniprot ID   A7N119
Organism   Vibrio campbellii ATCC BAA-1116     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2345926..2357035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M892_RS10755 (M892_10775) rsmB 2346845..2348128 (-) 1284 WP_012126637.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  M892_RS10760 (M892_10780) fmt 2348210..2349157 (-) 948 WP_005535506.1 methionyl-tRNA formyltransferase -
  M892_RS10765 (M892_10785) def 2349191..2349709 (-) 519 WP_005450979.1 peptide deformylase -
  M892_RS10770 (M892_10790) - 2349848..2350942 (+) 1095 WP_012126636.1 LysM peptidoglycan-binding domain-containing protein -
  M892_RS10775 (M892_10795) dprA 2350926..2352035 (+) 1110 WP_012126635.1 DNA-processing protein DprA Machinery gene
  M892_RS10780 (M892_10800) - 2352038..2352517 (+) 480 WP_005429833.1 DUF494 family protein -
  M892_RS10785 (M892_17625) - 2352540..2353104 (+) 565 Protein_2137 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  M892_RS10790 (M892_10805) - 2353171..2354304 (-) 1134 WP_012126633.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  M892_RS10795 (M892_10810) purE 2354309..2354794 (-) 486 WP_005429815.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  M892_RS10800 (M892_10815) - 2354994..2355551 (+) 558 WP_012126631.1 L-threonylcarbamoyladenylate synthase -
  M892_RS10805 (M892_10820) hemF 2355586..2356503 (+) 918 WP_005535491.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39374.05 Da        Isoelectric Point: 5.8166

>NTDB_id=61959 M892_RS10775 WP_012126635.1 2350926..2352035(+) (dprA) [Vibrio campbellii ATCC BAA-1116]
MTPQNDIDLAAWLKLSCLPGIGGVKLNKLLSKDTPSNIVQYSTEQLQLLGLTAKQLQAWSQVDKEVDACLTWVAASSHHH
ILTLADALYPPLLKQTVAPPPLLFVKGEASCLSQPQIAMVGSRNASVDGLQHARTFASDLVQHDLIVTSGLALGIDGHAH
DGALLAGGKTIAVLGSGLEQVYPARHRGLAQRVAENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIKNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSAPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=61959 M892_RS10775 WP_012126635.1 2350926..2352035(+) (dprA) [Vibrio campbellii ATCC BAA-1116]
ATGACACCACAAAATGATATTGATCTCGCTGCCTGGTTAAAGCTTAGTTGTTTACCGGGCATCGGTGGGGTCAAGCTGAA
TAAGCTGCTCAGCAAAGATACGCCGAGCAATATTGTCCAATACTCGACAGAGCAGCTTCAGCTTTTGGGCTTAACGGCAA
AACAGTTGCAAGCATGGTCGCAGGTCGATAAAGAAGTCGATGCTTGTCTGACTTGGGTTGCAGCATCTTCTCATCATCAT
ATTCTTACGTTGGCGGATGCTTTGTATCCGCCACTTCTCAAACAAACCGTCGCACCGCCTCCTTTACTCTTTGTAAAAGG
AGAGGCGAGCTGTTTGTCTCAACCTCAAATAGCTATGGTTGGCAGCCGTAATGCCAGTGTGGATGGGTTACAACATGCAA
GAACTTTTGCATCTGACTTGGTGCAACACGATCTGATCGTTACCAGTGGCTTAGCATTGGGTATTGATGGTCATGCTCAT
GATGGTGCGCTGTTGGCTGGCGGTAAAACCATCGCAGTGCTAGGTTCGGGGTTAGAACAAGTGTACCCAGCAAGACACCG
AGGTTTGGCGCAGCGAGTGGCTGAAAATGGAGCGCTTGTTTCTGAGTTTCGCCCAGATGCTAAGCCTCGCGCAGAAAACT
TTCCACGGCGTAACCGAATCATCAGTGGTTTGTCACTGGGTGTTTTGGTGGTGGAAGCGGCTGAAAAAAGTGGCTCCTTG
ATTACGGCGCGTTATGCTTTAGAACAAGGTCGAGAAGTTTTCGCTCTGCCAGCTTCGATTAATGCACCCAACGCCAGTGG
CGGTAATCAATTGATTAAAAACGGGGCTTGTCTCGTACAAAATACCCAAGAGGTGCTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTAGATTTATTTTCTGCGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(307-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7N119

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

98.916

100

0.989
  dprA Vibrio cholerae strain A1552

58.378

100

0.585
  dprA Glaesserella parasuis strain SC1401

47.989

100

0.485
  dprA Haemophilus influenzae Rd KW20

45.115

94.309

0.425
  dprA Legionella pneumophila strain ERS1305867

46.505

89.16

0.415
  dprA Neisseria meningitidis strain C311

37.596

100

0.398
  dprA Neisseria meningitidis MC58

37.596

100

0.398
  dprA Neisseria gonorrhoeae MS11

36.693

100

0.385
  dprA Neisseria gonorrhoeae strain FA1090

36.434

100

0.382

Multiple sequence alignment