Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SIR_RS17425 Genome accession   NC_022246
Coordinates   1585335..1587314 (-) Length   659 a.a.
NCBI ID   WP_021003168.1    Uniprot ID   T1ZH97
Organism   Streptococcus intermedius B196     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1580335..1592314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS17405 (SIR_1507) amiF 1580529..1581452 (-) 924 WP_021003167.1 ATP-binding cassette domain-containing protein Regulator
  SIR_RS17410 (SIR_1508) amiE 1581463..1582530 (-) 1068 WP_009569325.1 ABC transporter ATP-binding protein Regulator
  SIR_RS17415 (SIR_1509) amiD 1582539..1583465 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  SIR_RS17420 (SIR_1510) amiC 1583465..1584961 (-) 1497 WP_003074402.1 ABC transporter permease Regulator
  SIR_RS17425 (SIR_1511) amiA3 1585335..1587314 (-) 1980 WP_021003168.1 peptide ABC transporter substrate-binding protein Regulator
  SIR_RS17430 (SIR_1512) amiA3 1587511..1589487 (-) 1977 WP_009569328.1 peptide ABC transporter substrate-binding protein Regulator
  SIR_RS17435 (SIR_1513) - 1589646..1590335 (-) 690 WP_021003169.1 B3/4 domain-containing protein -
  SIR_RS17440 (SIR_1514) - 1590557..1592170 (-) 1614 WP_021003170.1 CTP synthase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73344.04 Da        Isoelectric Point: 8.3316

>NTDB_id=61905 SIR_RS17425 WP_021003168.1 1585335..1587314(-) (amiA3) [Streptococcus intermedius B196]
MKKSKIIALTAVALLATGTLAACSGSKTGSSNKTFSYVYEQDPDNLDYLTTGKASTSNITSNVIDGLLENDRYGNLIPSV
AKDWTVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADKKSDAIYLVQDSIKGLDAYMKGENKDFSAVGI
KAVDDYTVQYTLNRPESFWNSKTTMGVLAPVNAEFLKSKGNKFAQATDPSSILYNGPYLLKSITAKSSVEFAKNPNYWDK
KNVHIDHIKLSYYDGQDQDKLAKGFSDGSFTNAKVFPTSPSYASVSKKYKNNIVYTPQDATTYLVATNIDRQSYNHTSKT
TDAQKTSTKKALLNKDFRQAITFAFDRTAYASQVNGKDGATKMLRNLFVPPTFVQTDDKNFGELVKEKLVGYDESWKDVN
LNDAQDGLYNPTKAKEKLAKAKAALQADGVQFPIHIDMPVDQTATNKVQRVQSLKQSIEKNLGKENVVIDIQQMSKDDVN
NITYFAESAAAEDWDLSDNVGWSPDFQDPSTYLDVIKPSSGENTKTYLGFDSGKNNAAAAQVGMNEYEKLLNEAEKETTN
TNARYEKYAAAQAWLTDNALVIPTTTLTGRPILSRTVPFTNPFAWSGNKGNSEIILYKYLELQDEPVTQDQYKKAMTKWN
KERSKSNKKAQEELADHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=61905 SIR_RS17425 WP_021003168.1 1585335..1587314(-) (amiA3) [Streptococcus intermedius B196]
ATGAAGAAAAGTAAAATCATTGCCTTAACGGCTGTTGCCTTACTCGCGACGGGGACATTAGCGGCTTGTTCTGGTTCTAA
AACAGGTTCTAGTAACAAAACGTTTTCGTATGTTTATGAACAAGATCCGGATAATCTAGATTATCTGACAACTGGGAAGG
CCTCTACTTCAAACATTACAAGTAACGTCATTGATGGCCTCTTGGAAAATGACCGTTATGGGAACTTAATTCCTTCTGTG
GCAAAAGATTGGACCGTCTCTAAAGACGGCTTGACTTACACTTACAAACTTCGCAAGGGAGTTAAATGGTATACTTCAGA
AGGGGAAGAGTATGCAGAAGTTAAAGCGCAAGACTTTGTGACAGGTTTGAAGCACGCTGCAGATAAGAAATCTGATGCCA
TTTATTTGGTGCAAGATTCCATTAAAGGTTTGGATGCTTATATGAAAGGTGAAAATAAAGATTTCTCTGCTGTTGGTATA
AAAGCAGTTGATGATTATACCGTCCAATACACACTTAATCGACCAGAAAGCTTTTGGAACTCGAAAACAACAATGGGAGT
TTTAGCACCAGTTAATGCAGAATTTTTGAAATCAAAAGGCAATAAATTTGCGCAAGCAACAGATCCATCTAGTATTCTTT
ACAATGGACCTTACTTGCTAAAATCTATCACAGCGAAATCATCTGTTGAATTTGCTAAAAATCCAAACTATTGGGATAAG
AAAAACGTGCACATTGATCACATCAAGTTATCTTACTATGATGGTCAGGATCAGGATAAACTGGCTAAAGGATTTAGCGA
TGGCTCATTTACCAATGCCAAAGTATTTCCAACCAGTCCAAGTTATGCTTCTGTCAGCAAGAAATACAAAAACAACATCG
TTTATACTCCGCAAGATGCAACCACTTATCTAGTGGCTACAAACATTGATCGTCAATCTTACAATCATACATCAAAGACA
ACAGATGCTCAAAAGACATCTACTAAGAAAGCATTATTGAATAAAGATTTTCGTCAAGCAATTACCTTTGCATTTGACCG
TACTGCTTATGCTTCACAGGTGAATGGTAAAGACGGTGCGACGAAGATGCTTCGTAATCTCTTTGTACCGCCAACTTTTG
TTCAAACAGATGATAAGAACTTTGGAGAATTGGTCAAAGAAAAATTAGTTGGTTACGATGAAAGTTGGAAAGATGTCAAT
TTAAATGATGCGCAAGACGGGCTTTACAATCCAACGAAAGCCAAGGAAAAATTAGCTAAAGCCAAAGCAGCGCTTCAAGC
AGACGGTGTTCAATTCCCGATTCACATTGATATGCCAGTTGACCAAACGGCAACGAATAAAGTTCAACGTGTACAATCAT
TGAAACAATCGATTGAAAAGAATCTTGGCAAAGAAAATGTTGTGATTGATATTCAACAAATGTCTAAAGACGATGTAAAT
AATATCACTTACTTTGCTGAATCTGCTGCTGCAGAGGATTGGGATCTTTCAGACAATGTTGGTTGGAGTCCAGATTTCCA
AGATCCATCTACTTATCTTGATGTCATCAAGCCTTCAAGTGGTGAAAACACTAAGACTTATCTAGGATTTGATTCAGGTA
AAAATAATGCTGCTGCGGCACAAGTTGGTATGAATGAATATGAAAAATTACTGAATGAGGCCGAAAAAGAAACCACTAAT
ACGAATGCACGCTATGAAAAATATGCTGCAGCCCAAGCTTGGTTGACTGATAATGCTTTGGTTATTCCGACAACAACCTT
GACTGGTCGTCCAATTCTTTCTCGCACAGTGCCATTTACTAATCCATTTGCTTGGTCAGGAAACAAAGGGAATAGTGAAA
TCATTCTATATAAATATCTTGAACTCCAAGATGAGCCTGTTACACAAGATCAGTACAAGAAAGCTATGACTAAATGGAAT
AAAGAGCGATCAAAATCTAATAAAAAAGCTCAAGAAGAACTTGCAGATCATGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZH97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

61.818

100

0.619
  amiA3 Streptococcus thermophilus LMG 18311

61.212

100

0.613
  amiA Streptococcus salivarius strain HSISS4

60.909

100

0.61

Multiple sequence alignment