Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SIR_RS17405 Genome accession   NC_022246
Coordinates   1580529..1581452 (-) Length   307 a.a.
NCBI ID   WP_021003167.1    Uniprot ID   -
Organism   Streptococcus intermedius B196     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1575529..1586452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS17390 (SIR_1504) - 1577098..1578552 (+) 1455 WP_021003164.1 sucrose-6-phosphate hydrolase -
  SIR_RS17395 (SIR_1505) - 1578533..1579498 (+) 966 WP_021003165.1 LacI family DNA-binding transcriptional regulator -
  SIR_RS17400 (SIR_1506) - 1579584..1580402 (-) 819 WP_021003166.1 Cof-type HAD-IIB family hydrolase -
  SIR_RS17405 (SIR_1507) amiF 1580529..1581452 (-) 924 WP_021003167.1 ATP-binding cassette domain-containing protein Regulator
  SIR_RS17410 (SIR_1508) amiE 1581463..1582530 (-) 1068 WP_009569325.1 ABC transporter ATP-binding protein Regulator
  SIR_RS17415 (SIR_1509) amiD 1582539..1583465 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  SIR_RS17420 (SIR_1510) amiC 1583465..1584961 (-) 1497 WP_003074402.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34797.82 Da        Isoelectric Point: 5.9044

>NTDB_id=61901 SIR_RS17405 WP_021003167.1 1580529..1581452(-) (amiF) [Streptococcus intermedius B196]
MSEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGDIFFDGKRINGKKSKE
EESEIIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERQNKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKDLGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDADQHDYSVDKPEMVEIRPGHFVWANKAEVEKYNKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=61901 SIR_RS17405 WP_021003167.1 1580529..1581452(-) (amiF) [Streptococcus intermedius B196]
ATGTCTGAAAAATTAGTAGAAGTTAAAGATTTGGAGATTTCCTTCGGAGAAGGAAGCAAGAAATTTGTTGCTGTTAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCGCTTGTAGGAGAGTCCGGTTCTGGTAAAACAACAATCGGACGCG
CGATTATTGGTTTGAATAATACTAGTAAGGGAGATATCTTCTTTGATGGAAAAAGAATCAATGGTAAGAAATCAAAAGAA
GAAGAATCAGAAATCATTCGCAAAATTCAGATGATTTTCCAAGATCCTGCTGCTAGTTTGAATGAACGTGCGACGGTTGA
TTACATTATTTCAGAAGGTCTGTATAATTTCCATCTGTTTAAAGATGAAGAAGAACGTCAGAATAAAGTAAAAGATATTA
TTCATGAGGTAGGGCTGTTATCAGAGCATTTAACTCGCTATCCGCATGAATTCTCGGGTGGTCAGCGTCAGCGGATTGGG
ATTGCTCGTGCGCTTGTTATGGAACCAGACTTTGTGATTGCCGATGAGCCAATTTCAGCACTTGACGTGTCTGTTCGTGC
TCAAGTTTTAAATCTTCTTAAGAAATTCCAAAAAGATCTGGGCTTGACCTATCTTTTCATTGCTCATGACCTTTCTGTAG
TGCGTTTTATCTCAGATCGGATTGCTGTTATTTATAAGGGAGTGATTGTTGAAGTTGCTGAAACAGAAGAACTCTTCAAT
AATCCAATCCATCCTTATACTCAGTCTTTATTGTCAGCTGTCCCAATTCCGGATCCGATTTTGGAACGGAAGAAAGTGTT
GAAAGTCTACGATGCTGATCAACATGATTATTCAGTAGATAAGCCAGAAATGGTTGAAATTCGTCCGGGGCACTTTGTCT
GGGCTAATAAAGCAGAAGTTGAAAAGTATAATAAGGAATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.601

99.674

0.863
  amiF Streptococcus salivarius strain HSISS4

86.601

99.674

0.863
  amiF Streptococcus thermophilus LMD-9

86.275

99.674

0.86

Multiple sequence alignment