Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SIR_RS17420 Genome accession   NC_022246
Coordinates   1583465..1584961 (-) Length   498 a.a.
NCBI ID   WP_003074402.1    Uniprot ID   T1ZGK9
Organism   Streptococcus intermedius B196     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1578465..1589961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS17395 (SIR_1505) - 1578533..1579498 (+) 966 WP_021003165.1 LacI family DNA-binding transcriptional regulator -
  SIR_RS17400 (SIR_1506) - 1579584..1580402 (-) 819 WP_021003166.1 Cof-type HAD-IIB family hydrolase -
  SIR_RS17405 (SIR_1507) amiF 1580529..1581452 (-) 924 WP_021003167.1 ATP-binding cassette domain-containing protein Regulator
  SIR_RS17410 (SIR_1508) amiE 1581463..1582530 (-) 1068 WP_009569325.1 ABC transporter ATP-binding protein Regulator
  SIR_RS17415 (SIR_1509) amiD 1582539..1583465 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  SIR_RS17420 (SIR_1510) amiC 1583465..1584961 (-) 1497 WP_003074402.1 ABC transporter permease Regulator
  SIR_RS17425 (SIR_1511) amiA3 1585335..1587314 (-) 1980 WP_021003168.1 peptide ABC transporter substrate-binding protein Regulator
  SIR_RS17430 (SIR_1512) amiA3 1587511..1589487 (-) 1977 WP_009569328.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55912.09 Da        Isoelectric Point: 10.0131

>NTDB_id=61904 SIR_RS17420 WP_003074402.1 1583465..1584961(-) (amiC) [Streptococcus intermedius B196]
MKKYIFMRILRSLVSIFMVTTLTYTIIYTMVPRKLIFKQDPNYNKIATTPDKKTNYENTIFERMGYIDYYDTKELQEKAS
KENPSVTVEPTNANKKIYEAYIKKLGRGWKLQQFKESKQFYATREVPVYERVLGFYGNLIQIDHTGAVKDASNPNLKRYL
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFIHQNFVRLNLGTSYPTYANLPVLQVISQGQGQTQTSEVQFPTGKKTSSV
NIYTRTYKSPKHADVRDVANYGKDDPYTATESNYQYPSMLVSSSIVGLIGLALSYLIAVPLGSYMARFKNTLFDSISTGA
LTFLMSLPTIALVYIIRLIGSAIGLPDSFPILGAGDWRSYVLPAVILGLLSAPWTAVWIRRYMIDLQSQDFVRFARAKGL
SEQEISNKHIFKNAMVPLVSSIPGAIIGVITGATLTETIFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCLSIFALLLGD
ILMTMLDPRIKLTSKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=61904 SIR_RS17420 WP_003074402.1 1583465..1584961(-) (amiC) [Streptococcus intermedius B196]
ATGAAGAAATATATTTTTATGCGTATCTTACGCTCTTTAGTATCTATTTTCATGGTAACAACATTGACTTACACCATTAT
CTATACTATGGTGCCAAGAAAGTTGATTTTTAAACAGGATCCAAACTATAATAAAATAGCTACAACTCCTGATAAAAAGA
CTAATTATGAAAATACAATTTTTGAGCGTATGGGTTACATTGACTACTATGATACGAAGGAATTACAAGAAAAAGCTAGT
AAAGAGAATCCTTCTGTAACAGTAGAACCTACTAATGCAAATAAAAAAATCTATGAAGCTTACATCAAAAAGTTGGGGCG
TGGTTGGAAATTGCAGCAATTCAAAGAAAGTAAGCAATTTTATGCAACTCGAGAGGTTCCGGTTTATGAACGCGTTCTTG
GTTTCTATGGTAATTTGATTCAAATTGATCATACAGGGGCTGTGAAAGATGCTTCTAATCCAAACTTGAAGCGTTATCTT
CGTATTGAAAATGATCCTGCTATTGGTTGGTCTGTTGTTGGTTCTGGAACGAAACATAAATACTTGTTATATTTCAACAG
TCAATTTCCATTTATCCATCAAAATTTTGTAAGATTAAATTTGGGAACATCTTATCCAACCTATGCAAATCTCCCTGTTC
TACAAGTTATTTCACAAGGGCAAGGTCAAACGCAGACTTCAGAAGTTCAATTTCCAACAGGAAAGAAAACATCGTCTGTT
AATATTTACACGCGTACCTATAAGTCTCCAAAACACGCTGATGTGCGAGATGTTGCTAATTACGGGAAAGACGATCCTTA
TACAGCAACAGAAAGCAACTATCAGTATCCATCAATGCTTGTAAGTTCTTCAATTGTTGGTTTGATTGGTCTAGCATTGT
CTTACTTAATCGCTGTGCCGTTAGGCTCTTATATGGCTCGTTTTAAGAATACATTGTTTGACAGTATTTCAACTGGTGCT
TTGACTTTCTTAATGTCGCTGCCAACTATTGCTTTGGTTTATATCATTCGCTTGATTGGTTCAGCAATAGGATTGCCAGA
CTCCTTCCCTATTTTAGGTGCAGGAGATTGGCGTTCTTATGTGTTGCCAGCAGTCATTCTTGGACTGTTGAGTGCGCCTT
GGACTGCTGTTTGGATTCGCCGTTATATGATTGACCTGCAATCACAAGACTTTGTTCGTTTTGCTCGGGCAAAAGGTCTC
TCTGAACAAGAAATTTCAAATAAACATATTTTTAAAAACGCTATGGTACCACTTGTATCCAGCATACCTGGTGCTATTAT
TGGAGTTATCACAGGTGCAACCTTGACTGAAACAATTTTTGCTTTCCCTGGAATGGGTAAAATGCTGATTGACTCTGTCA
AAGCATCTAATAATTCTATGGTCGTTGGTCTTGTATTTATCTTTACATGTCTATCTATCTTTGCTCTTCTATTGGGTGAT
ATTCTGATGACCATGCTTGACCCACGTATTAAATTAACATCAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZGK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

80.522

100

0.805
  amiC Streptococcus thermophilus LMG 18311

79.518

100

0.795
  amiC Streptococcus thermophilus LMD-9

79.317

100

0.793

Multiple sequence alignment