Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SIR_RS17430 Genome accession   NC_022246
Coordinates   1587511..1589487 (-) Length   658 a.a.
NCBI ID   WP_009569328.1    Uniprot ID   A0AAE8G180
Organism   Streptococcus intermedius B196     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1582511..1594487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS17415 (SIR_1509) amiD 1582539..1583465 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  SIR_RS17420 (SIR_1510) amiC 1583465..1584961 (-) 1497 WP_003074402.1 ABC transporter permease Regulator
  SIR_RS17425 (SIR_1511) amiA3 1585335..1587314 (-) 1980 WP_021003168.1 peptide ABC transporter substrate-binding protein Regulator
  SIR_RS17430 (SIR_1512) amiA3 1587511..1589487 (-) 1977 WP_009569328.1 peptide ABC transporter substrate-binding protein Regulator
  SIR_RS17435 (SIR_1513) - 1589646..1590335 (-) 690 WP_021003169.1 B3/4 domain-containing protein -
  SIR_RS17440 (SIR_1514) - 1590557..1592170 (-) 1614 WP_021003170.1 CTP synthase -
  SIR_RS17445 (SIR_1515) rpoE 1592413..1593000 (-) 588 WP_003074392.1 DNA-directed RNA polymerase subunit delta -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72184.94 Da        Isoelectric Point: 9.2806

>NTDB_id=61906 SIR_RS17430 WP_009569328.1 1587511..1589487(-) (amiA3) [Streptococcus intermedius B196]
MKKGKIIAVAGLALLTSGLLAACSGSKSNSAETKFGYVYSGDPETLDYVTSGKATTSDLVTNGVDGLLENDKYGNLVPSM
AKSWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADKKSEALYLVQNSIKGLDAYVNGQTKDFSTVGV
KAVDDYTVQYTLNKPEPYWNSKTTSAIMWPINAEFLKSKGNKFGQSTDPNSILYNGPFLMKAITAKSAVEYVKNKHYWDK
DKVKVDKIKLAYYDGQDQDSLARNFKDGAYSYARLFPTSSNFATFEKQFKDNIYTAEAGAGTAALALNIDRQSYKHTAKK
TDEQKNSTKKALLNKDFRQALNFALDRESYAAQVNGKAGAATAIRNMFVPSNFVQVGEKSFGDAVEEKLASYGDTWKGVK
LADSQNGLYNPTKAKEKFAKAKAALQAQGVQFPIHLDVPTVETSKSYVARMQSLKQSVEKVLGKENVVMDLNMMSEDDFN
NITYYAPNAAGEDWDISGAVGWSPDYQDPSTYLDILKSTASDNTKTWFGFDSGSENAGAKAVGLDEYNKLVDEAGAETTD
IAKRYEKYAAAQAWLTDSSLVLPTMASTGAGTFVSRIQPFSGAFAQTGSKGSSTYYKYIKVGKDAVTKKDYEAAKKKWQK
EKAESNKKAQDKLADHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=61906 SIR_RS17430 WP_009569328.1 1587511..1589487(-) (amiA3) [Streptococcus intermedius B196]
ATGAAAAAAGGTAAAATCATCGCAGTTGCGGGGTTAGCTCTTTTAACTTCTGGCCTTTTAGCTGCTTGCTCGGGTTCGAA
ATCGAACTCCGCTGAAACCAAGTTCGGTTATGTGTATTCTGGTGATCCAGAAACTTTGGATTACGTAACATCAGGAAAAG
CAACTACTAGCGATCTTGTGACAAATGGAGTTGACGGATTGTTAGAAAATGACAAATATGGAAATCTTGTACCATCAATG
GCTAAGTCATGGACTGTATCAAAAGATGGTTTAACCTATACTTATAAACTTCGTAAGGGTGCCAAATGGTACACATCAGA
AGGTGAAGAGTATGCTGAAGTCAAGGCGCAAGATTTTGTAACTGGACTGAAACATGCTGCCGATAAAAAATCTGAAGCTC
TTTATTTGGTTCAAAATTCAATTAAAGGTTTAGATGCTTACGTGAATGGTCAAACAAAAGATTTTTCAACAGTAGGTGTG
AAAGCAGTTGATGACTATACTGTTCAGTATACATTAAACAAGCCAGAACCATATTGGAATTCTAAGACAACCTCTGCCAT
TATGTGGCCAATCAATGCTGAATTTTTGAAATCTAAAGGAAATAAATTTGGCCAATCAACAGATCCTAACTCTATCCTTT
ATAATGGGCCATTCCTGATGAAAGCTATTACAGCGAAATCTGCGGTAGAATATGTTAAAAATAAACATTATTGGGATAAA
GATAAAGTAAAAGTTGATAAGATTAAACTTGCTTACTATGATGGTCAAGACCAAGACTCTCTTGCGCGTAACTTTAAAGA
TGGAGCTTACTCTTATGCTCGTCTCTTCCCAACAAGCTCAAACTTTGCAACTTTTGAAAAGCAGTTCAAAGATAATATCT
ATACTGCAGAAGCAGGTGCAGGAACAGCAGCTTTAGCATTGAATATCGATCGTCAATCATACAAGCATACTGCCAAAAAG
ACAGATGAGCAAAAGAATTCAACGAAAAAAGCATTGTTGAACAAAGACTTCCGCCAAGCGCTAAACTTTGCACTGGATCG
TGAATCTTACGCAGCACAAGTCAATGGTAAAGCTGGAGCTGCCACAGCAATCCGCAATATGTTTGTGCCATCTAACTTTG
TTCAAGTTGGTGAAAAATCATTTGGTGATGCTGTAGAAGAAAAATTAGCGAGCTATGGTGATACATGGAAGGGTGTTAAA
TTAGCTGATTCACAAAACGGCTTGTACAATCCAACAAAAGCAAAAGAAAAATTTGCAAAAGCAAAAGCAGCTTTGCAAGC
TCAAGGTGTACAGTTCCCAATCCACTTAGATGTTCCTACTGTGGAAACTTCTAAGAGCTATGTTGCTCGGATGCAGTCTT
TGAAACAATCTGTTGAAAAAGTACTTGGCAAAGAAAATGTTGTCATGGACTTGAATATGATGTCAGAAGACGACTTTAAT
AACATCACTTACTATGCTCCAAACGCAGCTGGAGAAGACTGGGATATTTCAGGTGCTGTTGGTTGGAGTCCTGATTATCA
AGATCCATCTACTTATCTTGATATTTTGAAATCAACGGCTTCTGACAATACGAAGACTTGGTTTGGATTTGACTCTGGTA
GTGAAAATGCTGGTGCTAAAGCAGTTGGCTTGGACGAATATAATAAATTAGTCGATGAAGCAGGTGCAGAAACAACAGAC
ATTGCAAAACGTTATGAAAAATATGCAGCAGCACAAGCTTGGTTAACAGACAGTTCACTTGTCTTACCAACAATGGCTTC
AACAGGTGCCGGAACTTTTGTGTCACGCATTCAACCGTTCTCAGGTGCATTTGCGCAAACAGGTAGTAAAGGTAGCTCAA
CCTACTATAAATACATTAAAGTCGGTAAAGATGCTGTCACGAAGAAAGACTATGAAGCAGCTAAGAAGAAATGGCAAAAA
GAAAAGGCCGAATCTAATAAAAAAGCTCAAGATAAATTAGCTGATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

64.036

100

0.641
  amiA3 Streptococcus thermophilus LMG 18311

63.733

100

0.638
  amiA Streptococcus salivarius strain HSISS4

62.766

100

0.628

Multiple sequence alignment