Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SIR_RS17415 Genome accession   NC_022246
Coordinates   1582539..1583465 (-) Length   308 a.a.
NCBI ID   WP_003074404.1    Uniprot ID   -
Organism   Streptococcus intermedius B196     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1577539..1588465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS17395 (SIR_1505) - 1578533..1579498 (+) 966 WP_021003165.1 LacI family DNA-binding transcriptional regulator -
  SIR_RS17400 (SIR_1506) - 1579584..1580402 (-) 819 WP_021003166.1 Cof-type HAD-IIB family hydrolase -
  SIR_RS17405 (SIR_1507) amiF 1580529..1581452 (-) 924 WP_021003167.1 ATP-binding cassette domain-containing protein Regulator
  SIR_RS17410 (SIR_1508) amiE 1581463..1582530 (-) 1068 WP_009569325.1 ABC transporter ATP-binding protein Regulator
  SIR_RS17415 (SIR_1509) amiD 1582539..1583465 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  SIR_RS17420 (SIR_1510) amiC 1583465..1584961 (-) 1497 WP_003074402.1 ABC transporter permease Regulator
  SIR_RS17425 (SIR_1511) amiA3 1585335..1587314 (-) 1980 WP_021003168.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34489.54 Da        Isoelectric Point: 9.8589

>NTDB_id=61903 SIR_RS17415 WP_003074404.1 1582539..1583465(-) (amiD) [Streptococcus intermedius B196]
MATIDKSKFTFVKRDDFASEIIDAPAYSYWKSVMRQFLRKKSTIAMLGILVAIVLMSFIYPIFSNFDFNDVSKVNDFSAR
YIKPNAQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRVMIEIYNIISNIPPLLIVIV
LTYSIGAGFWNLIFAMTITGWIGIAYNIRIQILRYRDLEYNLASRTLGTPTLKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=61903 SIR_RS17415 WP_003074404.1 1582539..1583465(-) (amiD) [Streptococcus intermedius B196]
ATGGCTACAATTGATAAAAGTAAGTTCACATTTGTAAAACGCGATGATTTTGCCTCTGAAATAATTGATGCACCAGCTTA
TTCTTACTGGAAATCTGTTATGCGTCAATTCTTAAGGAAAAAATCAACAATTGCTATGTTGGGTATTCTTGTTGCAATTG
TTTTGATGAGTTTCATCTATCCGATTTTTTCAAATTTCGATTTTAATGATGTAAGTAAAGTAAATGATTTTAGTGCTCGT
TATATCAAACCGAATGCTCAATATTGGTTTGGTACAGATAGTAACGGGAAGTCTCTCTTTGACGGAGTGTGGTTTGGAGC
ACGTAACTCTATTCTTATTTCAGTTATTGCAACCGTGATTAACCTTGTGATTGGTATTGTTATTGGTGGCATCTGGGGAA
TTTCAAAAACTGTCGATCGTGTGATGATTGAGATTTATAATATTATTTCTAACATCCCACCGCTTTTGATTGTCATTGTC
TTGACGTACTCAATCGGTGCAGGTTTCTGGAATTTGATTTTTGCCATGACGATTACTGGTTGGATTGGGATTGCTTACAA
CATTCGTATCCAAATTCTACGTTATCGTGATTTAGAATACAACCTCGCCAGTCGTACCTTGGGAACGCCAACGCTTAAAA
TTATTGTGAAAAATATTATGCCACAATTGGTTTCTGTCATTGTGACTACTGCTTCACAATTACTACCAAGTTTCATTTCA
TACGAAGCCTTTCTATCTTTCTTTGGTTTGGGGCTTCCTGTGACGGTGCCAAGTTTAGGGCGTTTGATTTCAGATTATTC
ACAAAACGTTACAACAAATGCATATCTTTTCTGGATTCCATTGACAACTTTAATCTTGGTTTCCCTTTCATTATTCGTTG
TCGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

86.039

100

0.86
  amiD Streptococcus thermophilus LMG 18311

83.442

100

0.834
  amiD Streptococcus thermophilus LMD-9

83.442

100

0.834

Multiple sequence alignment