Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LIT31_RS08590 Genome accession   NZ_CP085514
Coordinates   1792174..1793406 (+) Length   410 a.a.
NCBI ID   WP_252280438.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain KF19     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1787174..1798406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT31_RS08565 (LIT31_08595) - 1788389..1789114 (+) 726 WP_048684725.1 SDR family oxidoreductase -
  LIT31_RS08570 (LIT31_08600) - 1789195..1789452 (+) 258 WP_252280436.1 DUF3243 domain-containing protein -
  LIT31_RS08575 (LIT31_08605) - 1789694..1790485 (+) 792 WP_034313530.1 DUF3388 domain-containing protein -
  LIT31_RS08580 (LIT31_08610) - 1790494..1791402 (+) 909 WP_350494337.1 RodZ domain-containing protein -
  LIT31_RS08585 (LIT31_08615) pgsA 1791567..1792151 (+) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIT31_RS08590 (LIT31_08620) cinA 1792174..1793406 (+) 1233 WP_252280438.1 competence/damage-inducible protein A Machinery gene
  LIT31_RS08595 (LIT31_08625) recA 1793756..1794802 (+) 1047 WP_034313522.1 recombinase RecA Machinery gene
  LIT31_RS08600 (LIT31_08630) rny 1795156..1796715 (+) 1560 WP_034313519.1 ribonuclease Y -
  LIT31_RS08605 (LIT31_08635) - 1796868..1797665 (+) 798 WP_063591644.1 TIGR00282 family metallophosphoesterase -
  LIT31_RS08610 (LIT31_08640) spoVS 1797839..1798099 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44984.28 Da        Isoelectric Point: 4.9671

>NTDB_id=618767 LIT31_RS08590 WP_252280438.1 1792174..1793406(+) (cinA) [Peribacillus frigoritolerans strain KF19]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFQKRERPMTENNKKQALVLEGSEVLANDHGMAPGMVLSKSGITYMLLPGPPSEMEPMF
LSYGYEKIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKGPSKEKCEELILETE
KEILSRVGKFHYGSDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGMVCYTNDAKSDVLGVSDD
TISEYGVVSGECAMEMASNVRSKLDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGNTHFKELNLSGSRAQNRIRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=618767 LIT31_RS08590 WP_252280438.1 1792174..1793406(+) (cinA) [Peribacillus frigoritolerans strain KF19]
ATGGATGCAGAAATCATTGCAGTGGGCTCAGAGCTTCTTTTAGGTCAAATCAATAACACTAATGGAAGATTCTTATCGCA
GCAGTTTGCGGAAATGGGGATCAACGTTTTTTACCATACTGTGGTTGGGGATAACGACCGCCGATTACAACAAGCTATAG
AAATCGCTGAATCGAGGGCGAACTTGATTGTTTTTACCGGTGGGCTTGGTCCTACCAAAGATGACTTAACGAAAGAAACG
ATTGCTCGCCATATCGGGAAAAAGCTCGTTTTTAATGATGAAGCTTTGCAATCCATTGAAGCTTACTTCCAAAAACGGGA
ACGGCCGATGACGGAAAACAACAAAAAGCAGGCCCTTGTCTTGGAAGGCAGTGAAGTATTGGCAAACGATCATGGCATGG
CCCCGGGAATGGTCCTGTCCAAATCCGGGATTACATATATGCTCCTGCCTGGTCCACCAAGTGAAATGGAGCCGATGTTT
TTAAGTTATGGTTATGAAAAGATCATGAATAAATTGGAAAAGCATGAACGGATCGATTCCAAGGTTCTCCGGTTCTACGG
TATAGGTGAAGCCGAACTGGAAACGGTGATTGAAGATCTTCTTGTCAATCAAACGAATCCGACAATCGCTCCGCTGGCAG
CCGAAGGGGAAGTGACGTTAAGGATCACCGCCAAAGGCCCTTCCAAAGAAAAATGCGAAGAACTTATTTTAGAAACGGAA
AAAGAAATTCTTAGCAGGGTCGGCAAGTTCCATTATGGAAGTGATAATACTTCGCTAATAAAGGAACTTGTAAAAGAATT
AACGGTCCGCAAGCTTTCAATCGCGGCAGCTGAAAGCTTGACCGGGGGGATGTTCCAAGAACAGCTGACAACCATCCCGG
GAGCCGGTAAAGTCTTTAAGGGCGGAATGGTCTGCTATACGAATGATGCGAAGTCCGATGTCCTCGGTGTCAGTGATGAT
ACCATATCTGAGTATGGGGTGGTCAGCGGTGAGTGTGCAATGGAAATGGCCTCTAATGTCCGGAGTAAGCTCGATGCGGA
TGTAGGCATAAGCTTTACGGGTGTTGCAGGGCCGGACGAACAAGAAGGCAAGCCTGTAGGTACAGTATTTATTGGCATTT
CCTATCGGGATGGAAACACTCACTTCAAGGAGTTGAATCTTTCCGGAAGCAGGGCACAAAACCGTATTCGGAGTGTGAAG
TACGGCTGTCATTACCTATTAAGGGATTTATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.578

99.512

0.583
  cinA Streptococcus pneumoniae TIGR4

45

100

0.461
  cinA Streptococcus mitis SK321

44.762

100

0.459
  cinA Streptococcus pneumoniae Rx1

44.524

100

0.456
  cinA Streptococcus pneumoniae R6

44.524

100

0.456
  cinA Streptococcus pneumoniae D39

44.286

100

0.454
  cinA Streptococcus mitis NCTC 12261

44.286

100

0.454
  cinA Streptococcus mutans UA159

43.317

98.537

0.427
  cinA Streptococcus suis isolate S10

39.098

97.317

0.38